CRISPRone

CRISPRone report for GCA_900164965.1_16852_2_84

♦ Seq 1: FUOU01000011.1 Clostridioides difficile strain VRECD0101 genome assembly, contig: ERS716977SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 134226 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18207-18765 bp 2 Locus 2: 117064-118713 bp Zoom in on locus 1 x9 Zoom in on locus 2 x3 x14 CRISPR array Location: 18207-18765 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 18207-18765 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 117064-117225 bp Num of repeats: 3 Spacers: s9-s10 CRISPR array Location: 117064-117225 bp Num of repeats: 3 Spacers: s9-s10 CRISPR array Location: 117827-118713 bp Num of repeats: 14 Spacers: s11-s23 CRISPR array Location: 117827-118713 bp Num of repeats: 14 Spacers: s11-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18207-18765 bp]: array | spacers
           [Locus range 117064-117225 bp]: array | spacers
           [Locus range 117827-118713 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOU01000003.1 Clostridioides difficile strain VRECD0101 genome assembly, contig: ERS716977SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 495402 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 197016-197636 bp 2 Locus 2: 403473-403829 bp Zoom in on locus 1 x10 Zoom in on locus 2 x6 CRISPR array Location: 197016-197636 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 197016-197636 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 403473-403829 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 403473-403829 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 197016-197636 bp]: array | spacers
           [Locus range 403473-403829 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOU01000001.1 Clostridioides difficile strain VRECD0101 genome assembly, contig: ERS716977SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1078985 bp; # of CRISPR array = 5; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124462-126201 bp 2 Locus 2: 441293-441518 bp 3 Locus 3: 487189-488598 bp 4 Locus 4: 784935-786016 bp 5 Locus 5: 951454-959319 bp 6 Locus 6: 1032589-1032947 bp Zoom in on locus 1 x27 Zoom in on locus 2 x4 Zoom in on locus 3 x22 Zoom in on locus 4 x17 Zoom in on locus 5 Zoom in on locus 6 x6 CRISPR array Location: 124462-126201 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 124462-126201 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 441293-441518 bp Num of repeats: 4 Spacers: s27-s29 CRISPR array Location: 441293-441518 bp Num of repeats: 4 Spacers: s27-s29 CRISPR array Location: 487189-488598 bp Num of repeats: 22 Spacers: s30-s50 CRISPR array Location: 487189-488598 bp Num of repeats: 22 Spacers: s30-s50 CRISPR array Location: 784935-786016 bp Num of repeats: 17 Spacers: s51-s66 CRISPR array Location: 784935-786016 bp Num of repeats: 17 Spacers: s51-s66 Gene: cd09641:cas3HD Type: Type-I Location: 951454-953862 bp Gene: cd09693:cas5 Type: Type-I Location: 953889-954686 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 954702-955715 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 955735-957210 bp Gene: pfam01881:cas6 Type: other Location: 957215-957952 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 958210-959319 bp CRISPR array Location: 1032589-1032947 bp Num of repeats: 6 Spacers: s67-s71 CRISPR array Location: 1032589-1032947 bp Num of repeats: 6 Spacers: s67-s71 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 124462-126201 bp]: array | spacers
           [Locus range 441293-441518 bp]: array | spacers
           [Locus range 487189-488598 bp]: array | spacers
           [Locus range 784935-786016 bp]: array | spacers
           [Locus range 1032589-1032947 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUOU01000012.1 Clostridioides difficile strain VRECD0101 genome assembly, contig: ERS716977SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 91965 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22589-29872 bp Zoom in on locus 1 x17 Gene: cd09693:cas5 Type: Type-I Location: 22589-23236 bp Gene: pfam01881:cas6 Type: other Location: 23227-23991 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 23993-25141 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 25162-26232 bp Gene: COG1203:cas3 Type: Type-I Location: 26243-28225 bp CRISPR array Location: 28792-29872 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 28792-29872 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 28792-29872 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUOU01000004.1 Clostridioides difficile strain VRECD0101 genome assembly, contig: ERS716977SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 485062 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 286544-297752 bp Zoom in on locus 1 x26 CRISPR array Location: 286544-288214 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 286544-288214 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 288398-288664 bp Gene: cd09722:cas1 Type: universal Location: 288667-289647 bp Gene: pfam01930:cas4 Type: Type-I Location: 289650-290168 bp Gene: COG1203:cas3 Type: Type-I Location: 290216-292537 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 292548-293249 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 293251-294165 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 294167-296017 bp Gene: pfam01881:cas6 Type: other Location: 296023-296817 bp Gene: pfam13280:WYL Type: other Location: 296838-297752 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 286544-288214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)