CRISPRone

CRISPRone report for GCA_900164975.1_16852_2_85

♦ Seq 1: FUOT01000014.1 Clostridioides difficile strain VRECD0102 genome assembly, contig: ERS716978SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 43901 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29768-29993 bp Zoom in on locus 1 x4 CRISPR array Location: 29768-29993 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 29768-29993 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29768-29993 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOT01000003.1 Clostridioides difficile strain VRECD0102 genome assembly, contig: ERS716978SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 597153 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 57639-57999 bp 2 Locus 2: 168303-169387 bp 3 Locus 3: 409277-410431 bp Zoom in on locus 1 x6 Zoom in on locus 2 x17 Zoom in on locus 3 x18 CRISPR array Location: 57639-57999 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 57639-57999 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 168303-169387 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 168303-169387 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 409277-410431 bp Num of repeats: 18 Spacers: s22-s38 CRISPR array Location: 409277-410431 bp Num of repeats: 18 Spacers: s22-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 57639-57999 bp]: array | spacers
           [Locus range 168303-169387 bp]: array | spacers
           [Locus range 409277-410431 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOT01000004.1 Clostridioides difficile strain VRECD0102 genome assembly, contig: ERS716978SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 494955 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28504-35522 bp 2 Locus 2: 234865-246863 bp Zoom in on locus 1 x13 Zoom in on locus 2 x38 Gene: cd09693:cas5 Type: Type-I Location: 28504-29151 bp Gene: pfam01881:cas6 Type: other Location: 29142-29906 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 29908-31056 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31077-32147 bp Gene: COG1203:cas3 Type: Type-I Location: 32158-34140 bp CRISPR array Location: 34706-35522 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 34706-35522 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam13280:WYL Type: other Location: 234865-235752 bp Gene: pfam01881:cas6 Type: other Location: 235830-236567 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 236573-238450 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 238452-239366 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 239368-240069 bp Gene: cd09641:cas3HD Type: Type-I Location: 240080-242401 bp Gene: pfam01930:cas4 Type: Type-I Location: 242416-242967 bp Gene: cd09722:cas1 Type: universal Location: 242970-243950 bp Gene: cd09725:cas2 Type: universal Location: 243953-244219 bp CRISPR array Location: 244403-246863 bp Num of repeats: 38 Spacers: s13-s49 CRISPR array Location: 244403-246863 bp Num of repeats: 38 Spacers: s13-s49 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34706-35522 bp]: array | spacers
           [Locus range 244403-246863 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUOT01000006.1 Clostridioides difficile strain VRECD0102 genome assembly, contig: ERS716978SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 159208 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20128-22314 bp Zoom in on locus 1 x2 x5 CRISPR array Location: 20128-20222 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 20128-20222 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 22019-22314 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 22019-22314 bp Num of repeats: 5 Spacers: s2-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20128-20222 bp]: array | spacers
           [Locus range 22019-22314 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUOT01000001.1 Clostridioides difficile strain VRECD0102 genome assembly, contig: ERS716978SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1202233 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38327-40871 bp 2 Locus 2: 704990-706541 bp 3 Locus 3: 871905-880223 bp 4 Locus 4: 953642-954331 bp Zoom in on locus 1 x39 Zoom in on locus 2 x24 Zoom in on locus 3 Zoom in on locus 4 x11 CRISPR array Location: 38327-40871 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 38327-40871 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 704990-706541 bp Num of repeats: 24 Spacers: s39-s61 CRISPR array Location: 704990-706541 bp Num of repeats: 24 Spacers: s39-s61 Gene: cd09641:cas3HD Type: Type-I Location: 871905-874313 bp Gene: cd09693:cas5 Type: Type-I Location: 874340-875137 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 875153-876166 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 876186-877661 bp Gene: pfam01881:cas6 Type: other Location: 877666-878403 bp Gene: unk Type: unknown Location: 878504-878680 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 879114-880223 bp CRISPR array Location: 953642-954331 bp Num of repeats: 11 Spacers: s62-s71 CRISPR array Location: 953642-954331 bp Num of repeats: 11 Spacers: s62-s71 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38327-40871 bp]: array | spacers
           [Locus range 704990-706541 bp]: array | spacers
           [Locus range 953642-954331 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)