CRISPRone

CRISPRone report for GCA_900164985.1_16852_2_86

♦ Seq 1: FUOV01000001.1 Clostridioides difficile strain VRECD0103 genome assembly, contig: ERS716979SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1033439 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164371-164531 bp 2 Locus 2: 542582-543265 bp 3 Locus 3: 706536-714854 bp 4 Locus 4: 788137-788627 bp Zoom in on locus 1 x3 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x8 CRISPR array Location: 164371-164531 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 164371-164531 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 542582-543265 bp Num of repeats: 11 Spacers: s3-s12 CRISPR array Location: 542582-543265 bp Num of repeats: 11 Spacers: s3-s12 Gene: cd09641:cas3HD Type: Type-I Location: 706536-708944 bp Gene: cd09693:cas5 Type: Type-I Location: 708971-709768 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 709784-710797 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 710817-712292 bp Gene: pfam01881:cas6 Type: other Location: 712297-713034 bp Gene: unk Type: unknown Location: 713135-713311 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 713745-714854 bp CRISPR array Location: 788137-788627 bp Num of repeats: 8 Spacers: s13-s19 CRISPR array Location: 788137-788627 bp Num of repeats: 8 Spacers: s13-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 164371-164531 bp]: array | spacers
           [Locus range 542582-543265 bp]: array | spacers
           [Locus range 788137-788627 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOV01000002.1 Clostridioides difficile strain VRECD0103 genome assembly, contig: ERS716979SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 909172 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63944-65556 bp 2 Locus 2: 312296-317424 bp 3 Locus 3: 408154-409565 bp 4 Locus 4: 519887-520707 bp Zoom in on locus 1 x25 Zoom in on locus 2 x17 x4 x7 Zoom in on locus 3 x22 Zoom in on locus 4 x13 CRISPR array Location: 63944-65556 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 63944-65556 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 312296-313379 bp Num of repeats: 17 Spacers: s25-s40 CRISPR array Location: 312296-313379 bp Num of repeats: 17 Spacers: s25-s40 CRISPR array Location: 315173-315396 bp Num of repeats: 4 Spacers: s41-s43 CRISPR array Location: 315173-315396 bp Num of repeats: 4 Spacers: s41-s43 CRISPR array Location: 317001-317424 bp Num of repeats: 7 Spacers: s44-s49 CRISPR array Location: 317001-317424 bp Num of repeats: 7 Spacers: s44-s49 CRISPR array Location: 408154-409565 bp Num of repeats: 22 Spacers: s50-s70 CRISPR array Location: 408154-409565 bp Num of repeats: 22 Spacers: s50-s70 CRISPR array Location: 519887-520707 bp Num of repeats: 13 Spacers: s71-s82 CRISPR array Location: 519887-520707 bp Num of repeats: 13 Spacers: s71-s82 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63944-65556 bp]: array | spacers
           [Locus range 312296-313379 bp]: array | spacers
           [Locus range 315173-315396 bp]: array | spacers
           [Locus range 317001-317424 bp]: array | spacers
           [Locus range 408154-409565 bp]: array | spacers
           [Locus range 519887-520707 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOV01000015.1 Clostridioides difficile strain VRECD0103 genome assembly, contig: ERS716979SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 15209 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8819-10164 bp Zoom in on locus 1 x21 CRISPR array Location: 8819-10164 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 8819-10164 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8819-10164 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUOV01000003.1 Clostridioides difficile strain VRECD0103 genome assembly, contig: ERS716979SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 508865 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252648-264180 bp 2 Locus 2: 486602-486695 bp Zoom in on locus 1 x31 Zoom in on locus 2 x2 CRISPR array Location: 252648-254642 bp Num of repeats: 31 Spacers: s1-s30 CRISPR array Location: 252648-254642 bp Num of repeats: 31 Spacers: s1-s30 Gene: cd09725:cas2 Type: universal Location: 254826-255092 bp Gene: cd09722:cas1 Type: universal Location: 255095-256075 bp Gene: pfam01930:cas4 Type: Type-I Location: 256078-256596 bp Gene: COG1203:cas3 Type: Type-I Location: 256644-258965 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258976-259677 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259679-260593 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260595-262445 bp Gene: pfam01881:cas6 Type: other Location: 262451-263245 bp Gene: pfam13280:WYL Type: other Location: 263266-264180 bp CRISPR array Location: 486602-486695 bp Num of repeats: 2 Spacers: s31-s31 CRISPR array Location: 486602-486695 bp Num of repeats: 2 Spacers: s31-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252648-254642 bp]: array | spacers
           [Locus range 486602-486695 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)