CRISPRone

CRISPRone report for GCA_900165005.1_16852_2_88

♦ Seq 1: FUOW01000003.1 Clostridioides difficile strain VRECD0105 genome assembly, contig: ERS716981SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 519195 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 498888-498981 bp Zoom in on locus 1 x2 CRISPR array Location: 498888-498981 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 498888-498981 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 498888-498981 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOW01000001.1 Clostridioides difficile strain VRECD0105 genome assembly, contig: ERS716981SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1267800 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 240464-241021 bp 2 Locus 2: 315241-323106 bp 3 Locus 3: 488863-489090 bp 4 Locus 4: 830425-830651 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x4 Zoom in on locus 4 x4 CRISPR array Location: 240464-241021 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 240464-241021 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 315241-316350 bp Gene: pfam01881:cas6 Type: other Location: 316608-317345 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 317350-318825 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 318845-319858 bp Gene: cd09693:cas5 Type: Type-I Location: 319874-320671 bp Gene: cd09641:cas3HD Type: Type-I Location: 320698-323106 bp CRISPR array Location: 488863-489090 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 488863-489090 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 830425-830651 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 830425-830651 bp Num of repeats: 4 Spacers: s12-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 240464-241021 bp]: array | spacers
           [Locus range 488863-489090 bp]: array | spacers
           [Locus range 830425-830651 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOW01000002.1 Clostridioides difficile strain VRECD0105 genome assembly, contig: ERS716981SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 568637 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29796-30222 bp 2 Locus 2: 277290-278048 bp 3 Locus 3: 394398-394819 bp Zoom in on locus 1 x7 Zoom in on locus 2 x12 Zoom in on locus 3 x7 CRISPR array Location: 29796-30222 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 29796-30222 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 277290-278048 bp Num of repeats: 12 Spacers: s7-s17 CRISPR array Location: 277290-278048 bp Num of repeats: 12 Spacers: s7-s17 CRISPR array Location: 394398-394819 bp Num of repeats: 7 Spacers: s18-s23 CRISPR array Location: 394398-394819 bp Num of repeats: 7 Spacers: s18-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29796-30222 bp]: array | spacers
           [Locus range 277290-278048 bp]: array | spacers
           [Locus range 394398-394819 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUOW01000005.1 Clostridioides difficile strain VRECD0105 genome assembly, contig: ERS716981SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 444262 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94795-96534 bp 2 Locus 2: 275988-277962 bp Zoom in on locus 1 x27 Zoom in on locus 2 x13 x9 CRISPR array Location: 94795-96534 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 94795-96534 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 275988-276805 bp Num of repeats: 13 Spacers: s27-s38 CRISPR array Location: 275988-276805 bp Num of repeats: 13 Spacers: s27-s38 CRISPR array Location: 277408-277962 bp Num of repeats: 9 Spacers: s39-s46 CRISPR array Location: 277408-277962 bp Num of repeats: 9 Spacers: s39-s46 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 94795-96534 bp]: array | spacers
           [Locus range 275988-276805 bp]: array | spacers
           [Locus range 277408-277962 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)