CRISPRone

CRISPRone report for GCA_900165015.1_16852_2_89

♦ Seq 1: FUOY01000003.1 Clostridioides difficile strain VRECD0106 genome assembly, contig: ERS716982SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 519395 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20194-20288 bp Zoom in on locus 1 x2 CRISPR array Location: 20194-20288 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 20194-20288 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20194-20288 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOY01000001.1 Clostridioides difficile strain VRECD0106 genome assembly, contig: ERS716982SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1924088 bp; # of CRISPR array = 9; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 240368-240925 bp 2 Locus 2: 315145-323010 bp 3 Locus 3: 488767-488994 bp 4 Locus 4: 830450-830676 bp 5 Locus 5: 1179183-1180922 bp 6 Locus 6: 1319587-1321561 bp 7 Locus 7: 1411085-1411843 bp 8 Locus 8: 1528193-1528549 bp 9 Locus 9: 1732718-1733144 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x4 Zoom in on locus 4 x4 Zoom in on locus 5 x27 Zoom in on locus 6 x13 x9 Zoom in on locus 7 x12 Zoom in on locus 8 x6 Zoom in on locus 9 x7 CRISPR array Location: 240368-240925 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 240368-240925 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 315145-316254 bp Gene: pfam01881:cas6 Type: other Location: 316512-317249 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 317254-318729 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 318749-319762 bp Gene: cd09693:cas5 Type: Type-I Location: 319778-320575 bp Gene: cd09641:cas3HD Type: Type-I Location: 320602-323010 bp CRISPR array Location: 488767-488994 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 488767-488994 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 830450-830676 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 830450-830676 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 1179183-1180922 bp Num of repeats: 27 Spacers: s15-s40 CRISPR array Location: 1179183-1180922 bp Num of repeats: 27 Spacers: s15-s40 CRISPR array Location: 1319587-1320404 bp Num of repeats: 13 Spacers: s41-s52 CRISPR array Location: 1319587-1320404 bp Num of repeats: 13 Spacers: s41-s52 CRISPR array Location: 1321007-1321561 bp Num of repeats: 9 Spacers: s53-s60 CRISPR array Location: 1321007-1321561 bp Num of repeats: 9 Spacers: s53-s60 CRISPR array Location: 1411085-1411843 bp Num of repeats: 12 Spacers: s61-s71 CRISPR array Location: 1411085-1411843 bp Num of repeats: 12 Spacers: s61-s71 CRISPR array Location: 1528193-1528549 bp Num of repeats: 6 Spacers: s72-s76 CRISPR array Location: 1528193-1528549 bp Num of repeats: 6 Spacers: s72-s76 CRISPR array Location: 1732718-1733144 bp Num of repeats: 7 Spacers: s77-s82 CRISPR array Location: 1732718-1733144 bp Num of repeats: 7 Spacers: s77-s82 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 240368-240925 bp]: array | spacers
           [Locus range 488767-488994 bp]: array | spacers
           [Locus range 830450-830676 bp]: array | spacers
           [Locus range 1179183-1180922 bp]: array | spacers
           [Locus range 1319587-1320404 bp]: array | spacers
           [Locus range 1321007-1321561 bp]: array | spacers
           [Locus range 1411085-1411843 bp]: array | spacers
           [Locus range 1528193-1528549 bp]: array | spacers
           [Locus range 1732718-1733144 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)