CRISPRone

CRISPRone report for GCA_900165025.1_16780_8_1

♦ Seq 1: FUOZ01000001.1 Clostridioides difficile strain VRECD0112 genome assembly, contig: ERS716988SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1202607 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38255-38616 bp 2 Locus 2: 356489-356650 bp 3 Locus 3: 512105-524030 bp 4 Locus 4: 713533-714218 bp 5 Locus 5: 876186-884051 bp 6 Locus 6: 957299-957856 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x44 Zoom in on locus 4 x11 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 38255-38616 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38255-38616 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 356489-356650 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 356489-356650 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 512105-512395 bp Gene: cd09722:cas1 Type: universal Location: 512606-513613 bp Gene: pfam01930:cas4 Type: Type-I Location: 513639-514133 bp CRISPR array Location: 514218-517088 bp Num of repeats: 44 Spacers: s8-s50 CRISPR array Location: 514218-517088 bp Num of repeats: 44 Spacers: s8-s50 Gene: cd09641:cas3HD Type: Type-I Location: 517278-519836 bp Gene: cd09693:cas5 Type: Type-I Location: 519860-520600 bp Gene: pfam05107:cas7b Type: Type-I Location: 520602-521591 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 521584-523323 bp Gene: cd09652:cas6 Type: other Location: 523335-524030 bp CRISPR array Location: 713533-714218 bp Num of repeats: 11 Spacers: s51-s60 CRISPR array Location: 713533-714218 bp Num of repeats: 11 Spacers: s51-s60 Gene: cd09641:cas3HD Type: Type-I Location: 876186-878594 bp Gene: cd09693:cas5 Type: Type-I Location: 878621-879418 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 879434-880447 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 880467-881942 bp Gene: pfam01881:cas6 Type: other Location: 881947-882684 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 882942-884051 bp CRISPR array Location: 957299-957856 bp Num of repeats: 9 Spacers: s61-s68 CRISPR array Location: 957299-957856 bp Num of repeats: 9 Spacers: s61-s68 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38255-38616 bp]: array | spacers
           [Locus range 356489-356650 bp]: array | spacers
           [Locus range 514218-517088 bp]: array | spacers
           [Locus range 713533-714218 bp]: array | spacers
           [Locus range 957299-957856 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOZ01000002.1 Clostridioides difficile strain VRECD0112 genome assembly, contig: ERS716988SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 644813 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189642-189869 bp 2 Locus 2: 398011-398432 bp 3 Locus 3: 508726-508953 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 Zoom in on locus 3 x4 CRISPR array Location: 189642-189869 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 189642-189869 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 398011-398432 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 398011-398432 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 508726-508953 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 508726-508953 bp Num of repeats: 4 Spacers: s10-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189642-189869 bp]: array | spacers
           [Locus range 398011-398432 bp]: array | spacers
           [Locus range 508726-508953 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)