CRISPRone

CRISPRone report for GCA_900165035.1_16780_8_2

♦ Seq 1: FUPA01000004.1 Clostridioides difficile strain VRECD0113 genome assembly, contig: ERS716989SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 579040 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 246107-246465 bp 2 Locus 2: 319747-328068 bp 3 Locus 3: 491340-491957 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 246107-246465 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 246107-246465 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 319747-320856 bp Gene: unk Type: unknown Location: 321290-321466 bp Gene: pfam01881:cas6 Type: other Location: 321567-322304 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 322309-323784 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 323804-324820 bp Gene: cd09693:cas5 Type: Type-I Location: 324836-325633 bp Gene: cd09641:cas3HD Type: Type-I Location: 325660-328068 bp CRISPR array Location: 491340-491957 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 491340-491957 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 246107-246465 bp]: array | spacers
           [Locus range 491340-491957 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPA01000003.1 Clostridioides difficile strain VRECD0113 genome assembly, contig: ERS716989SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 698873 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 212960-213054 bp 2 Locus 2: 435486-446467 bp Zoom in on locus 1 x2 Zoom in on locus 2 x23 CRISPR array Location: 212960-213054 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 212960-213054 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 435486-436373 bp Gene: pfam01881:cas6 Type: other Location: 436451-437188 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 437194-439044 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 439046-439960 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 439962-440663 bp Gene: COG1203:cas3 Type: Type-I Location: 440674-442995 bp Gene: pfam01930:cas4 Type: Type-I Location: 443010-443561 bp Gene: cd09722:cas1 Type: universal Location: 443564-444544 bp Gene: cd09725:cas2 Type: universal Location: 444547-444813 bp CRISPR array Location: 444997-446467 bp Num of repeats: 23 Spacers: s2-s23 CRISPR array Location: 444997-446467 bp Num of repeats: 23 Spacers: s2-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 212960-213054 bp]: array | spacers
           [Locus range 444997-446467 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPA01000001.1 Clostridioides difficile strain VRECD0113 genome assembly, contig: ERS716989SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 830497 bp; # of CRISPR array = 7; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92036-92522 bp 2 Locus 2: 246859-248008 bp 3 Locus 3: 459686-460179 bp 4 Locus 4: 570500-570991 bp 5 Locus 5: 661720-666651 bp Zoom in on locus 1 x8 Zoom in on locus 2 x18 Zoom in on locus 3 x8 Zoom in on locus 4 x8 Zoom in on locus 5 x7 x4 x14 CRISPR array Location: 92036-92522 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 92036-92522 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 246859-248008 bp Num of repeats: 18 Spacers: s8-s24 CRISPR array Location: 246859-248008 bp Num of repeats: 18 Spacers: s8-s24 CRISPR array Location: 459686-460179 bp Num of repeats: 8 Spacers: s25-s31 CRISPR array Location: 459686-460179 bp Num of repeats: 8 Spacers: s25-s31 CRISPR array Location: 570500-570991 bp Num of repeats: 8 Spacers: s32-s38 CRISPR array Location: 570500-570991 bp Num of repeats: 8 Spacers: s32-s38 CRISPR array Location: 661720-662144 bp Num of repeats: 7 Spacers: s39-s44 CRISPR array Location: 661720-662144 bp Num of repeats: 7 Spacers: s39-s44 CRISPR array Location: 663748-663972 bp Num of repeats: 4 Spacers: s45-s47 CRISPR array Location: 663748-663972 bp Num of repeats: 4 Spacers: s45-s47 CRISPR array Location: 665765-666651 bp Num of repeats: 14 Spacers: s48-s60 CRISPR array Location: 665765-666651 bp Num of repeats: 14 Spacers: s48-s60 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92036-92522 bp]: array | spacers
           [Locus range 246859-248008 bp]: array | spacers
           [Locus range 459686-460179 bp]: array | spacers
           [Locus range 570500-570991 bp]: array | spacers
           [Locus range 661720-662144 bp]: array | spacers
           [Locus range 663748-663972 bp]: array | spacers
           [Locus range 665765-666651 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUPA01000005.1 Clostridioides difficile strain VRECD0113 genome assembly, contig: ERS716989SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 378226 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 291761-291922 bp Zoom in on locus 1 x3 CRISPR array Location: 291761-291922 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 291761-291922 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 291761-291922 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUPA01000011.1 Clostridioides difficile strain VRECD0113 genome assembly, contig: ERS716989SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 68549 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3729-4879 bp Zoom in on locus 1 x18 CRISPR array Location: 3729-4879 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3729-4879 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3729-4879 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)