CRISPRone

CRISPRone report for GCA_900165045.1_16780_8_3

♦ Seq 1: FUPB01000001.1 Clostridioides difficile strain VRECD0114 genome assembly, contig: ERS716990SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 816933 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22913-24651 bp 2 Locus 2: 328235-328660 bp 3 Locus 3: 491080-498945 bp 4 Locus 4: 572226-572320 bp Zoom in on locus 1 x27 Zoom in on locus 2 x7 Zoom in on locus 3 Zoom in on locus 4 x2 CRISPR array Location: 22913-24651 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 22913-24651 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 328235-328660 bp Num of repeats: 7 Spacers: s27-s32 CRISPR array Location: 328235-328660 bp Num of repeats: 7 Spacers: s27-s32 Gene: cd09641:cas3HD Type: Type-I Location: 491080-493488 bp Gene: cd09693:cas5 Type: Type-I Location: 493515-494312 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 494328-495341 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 495361-496836 bp Gene: pfam01881:cas6 Type: other Location: 496841-497578 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 497836-498945 bp CRISPR array Location: 572226-572320 bp Num of repeats: 2 Spacers: s33-s33 CRISPR array Location: 572226-572320 bp Num of repeats: 2 Spacers: s33-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22913-24651 bp]: array | spacers
           [Locus range 328235-328660 bp]: array | spacers
           [Locus range 572226-572320 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPB01000014.1 Clostridioides difficile strain VRECD0114 genome assembly, contig: ERS716990SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 29453 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8733-10917 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 8733-8892 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8733-8892 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 10693-10917 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 10693-10917 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8733-8892 bp]: array | spacers
           [Locus range 10693-10917 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPB01000005.1 Clostridioides difficile strain VRECD0114 genome assembly, contig: ERS716990SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 289203 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 253913-254141 bp Zoom in on locus 1 x4 CRISPR array Location: 253913-254141 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 253913-254141 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 253913-254141 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUPB01000017.1 Clostridioides difficile strain VRECD0114 genome assembly, contig: ERS716990SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 14014 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8689-8851 bp Zoom in on locus 1 x3 CRISPR array Location: 8689-8851 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8689-8851 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8689-8851 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUPB01000004.1 Clostridioides difficile strain VRECD0114 genome assembly, contig: ERS716990SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 523494 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252447-262692 bp Zoom in on locus 1 x11 CRISPR array Location: 252447-253127 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 252447-253127 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 253311-253577 bp Gene: cd09722:cas1 Type: universal Location: 253580-254560 bp Gene: pfam01930:cas4 Type: Type-I Location: 254563-255081 bp Gene: COG1203:cas3 Type: Type-I Location: 255129-257450 bp Gene: cd09693:cas5 Type: Type-I Location: 257461-258162 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258164-259078 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259080-260957 bp Gene: pfam01881:cas6 Type: other Location: 260963-261700 bp Gene: pfam13280:WYL Type: other Location: 261778-262692 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252447-253127 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUPB01000003.1 Clostridioides difficile strain VRECD0114 genome assembly, contig: ERS716990SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 733665 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62094-63440 bp 2 Locus 2: 233166-233853 bp 3 Locus 3: 347516-347939 bp Zoom in on locus 1 x21 Zoom in on locus 2 x11 Zoom in on locus 3 x7 CRISPR array Location: 62094-63440 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 62094-63440 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 233166-233853 bp Num of repeats: 11 Spacers: s21-s30 CRISPR array Location: 233166-233853 bp Num of repeats: 11 Spacers: s21-s30 CRISPR array Location: 347516-347939 bp Num of repeats: 7 Spacers: s31-s36 CRISPR array Location: 347516-347939 bp Num of repeats: 7 Spacers: s31-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62094-63440 bp]: array | spacers
           [Locus range 233166-233853 bp]: array | spacers
           [Locus range 347516-347939 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)