CRISPRone

CRISPRone report for GCA_900165055.1_16780_8_4

♦ Seq 1: FUPC01000003.1 Clostridioides difficile strain VRECD0115 genome assembly, contig: ERS716991SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 546233 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 238920-242336 bp Zoom in on locus 1 x13 x5 CRISPR array Location: 238920-239742 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 238920-239742 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 242046-242336 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 242046-242336 bp Num of repeats: 5 Spacers: s13-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 238920-239742 bp]: array | spacers
           [Locus range 242046-242336 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPC01000001.1 Clostridioides difficile strain VRECD0115 genome assembly, contig: ERS716991SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1223067 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67402-67763 bp 2 Locus 2: 376759-376920 bp 3 Locus 3: 532375-544431 bp 4 Locus 4: 733934-734684 bp 5 Locus 5: 896646-904511 bp 6 Locus 6: 977759-978316 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x46 Zoom in on locus 4 x12 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 67402-67763 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 67402-67763 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 376759-376920 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 376759-376920 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 532375-532665 bp Gene: cd09722:cas1 Type: universal Location: 532876-533883 bp Gene: pfam01930:cas4 Type: Type-I Location: 533909-534403 bp CRISPR array Location: 534488-537489 bp Num of repeats: 46 Spacers: s8-s52 CRISPR array Location: 534488-537489 bp Num of repeats: 46 Spacers: s8-s52 Gene: cd09641:cas3HD Type: Type-I Location: 537679-540237 bp Gene: cd09693:cas5 Type: Type-I Location: 540261-541001 bp Gene: pfam05107:cas7b Type: Type-I Location: 541003-541992 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 541985-543724 bp Gene: cd09652:cas6 Type: other Location: 543736-544431 bp CRISPR array Location: 733934-734684 bp Num of repeats: 12 Spacers: s53-s63 CRISPR array Location: 733934-734684 bp Num of repeats: 12 Spacers: s53-s63 Gene: cd09641:cas3HD Type: Type-I Location: 896646-899054 bp Gene: cd09693:cas5 Type: Type-I Location: 899081-899878 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 899894-900907 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 900927-902402 bp Gene: pfam01881:cas6 Type: other Location: 902407-903144 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 903402-904511 bp CRISPR array Location: 977759-978316 bp Num of repeats: 9 Spacers: s64-s71 CRISPR array Location: 977759-978316 bp Num of repeats: 9 Spacers: s64-s71 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 67402-67763 bp]: array | spacers
           [Locus range 376759-376920 bp]: array | spacers
           [Locus range 534488-537489 bp]: array | spacers
           [Locus range 733934-734684 bp]: array | spacers
           [Locus range 977759-978316 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPC01000002.1 Clostridioides difficile strain VRECD0115 genome assembly, contig: ERS716991SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 644991 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135980-136206 bp 2 Locus 2: 246501-246921 bp 3 Locus 3: 455064-455356 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 Zoom in on locus 3 x5 CRISPR array Location: 135980-136206 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 135980-136206 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 246501-246921 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 246501-246921 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 455064-455356 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 455064-455356 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135980-136206 bp]: array | spacers
           [Locus range 246501-246921 bp]: array | spacers
           [Locus range 455064-455356 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)