CRISPRone

CRISPRone report for GCA_900165065.1_16780_8_10

♦ Seq 1: FUPD01000004.1 Clostridioides difficile strain VRECD0022 genome assembly, contig: ERS716997SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 348982 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252791-264270 bp Zoom in on locus 1 x30 CRISPR array Location: 252791-254732 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 252791-254732 bp Num of repeats: 30 Spacers: s1-s29 Gene: cd09725:cas2 Type: universal Location: 254916-255182 bp Gene: cd09722:cas1 Type: universal Location: 255185-256165 bp Gene: pfam01930:cas4 Type: Type-I Location: 256168-256686 bp Gene: COG1203:cas3 Type: Type-I Location: 256734-259055 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 259066-259767 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259769-260683 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260685-262535 bp Gene: pfam01881:cas6 Type: other Location: 262541-263335 bp Gene: pfam13280:WYL Type: other Location: 263356-264270 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252791-254732 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPD01000001.1 Clostridioides difficile strain VRECD0022 genome assembly, contig: ERS716997SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1391454 bp; # of CRISPR array = 5; # of cas gene = 8  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 241583-242075 bp 2 Locus 2: 317224-325542 bp 3 Locus 3: 487952-488704 bp 4 Locus 4: 852592-852687 bp 5 Locus 5: 1196555-1197897 bp 6 Locus 6: 1256414-1259670 bp 7 Locus 7: 1277404-1278029 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x2 Zoom in on locus 5 x21 Zoom in on locus 6 Zoom in on locus 7 x10 CRISPR array Location: 241583-242075 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 241583-242075 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 317224-318333 bp Gene: unk Type: unknown Location: 318767-318943 bp Gene: pfam01881:cas6 Type: other Location: 319044-319781 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 319786-321261 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 321281-322294 bp Gene: cd09693:cas5 Type: Type-I Location: 322310-323107 bp Gene: cd09641:cas3HD Type: Type-I Location: 323134-325542 bp CRISPR array Location: 487952-488704 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 487952-488704 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 852592-852687 bp Num of repeats: 2 Spacers: s19-s19 CRISPR array Location: 852592-852687 bp Num of repeats: 2 Spacers: s19-s19 CRISPR array Location: 1196555-1197897 bp Num of repeats: 21 Spacers: s20-s39 CRISPR array Location: 1196555-1197897 bp Num of repeats: 21 Spacers: s20-s39 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1256414-1256782 bp Gene: unk Type: unknown Location: 1256958-1258481 bp Gene: cas14:cas14 Type: Type-V Location: 1258954-1259670 bp CRISPR array Location: 1277404-1278029 bp Num of repeats: 10 Spacers: s40-s48 CRISPR array Location: 1277404-1278029 bp Num of repeats: 10 Spacers: s40-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 241583-242075 bp]: array | spacers
           [Locus range 487952-488704 bp]: array | spacers
           [Locus range 852592-852687 bp]: array | spacers
           [Locus range 1196555-1197897 bp]: array | spacers
           [Locus range 1277404-1278029 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPD01000002.1 Clostridioides difficile strain VRECD0022 genome assembly, contig: ERS716997SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 411041 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91663-92884 bp 2 Locus 2: 234618-234712 bp Zoom in on locus 1 x19 Zoom in on locus 2 x2 CRISPR array Location: 91663-92884 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 91663-92884 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 234618-234712 bp Num of repeats: 2 Spacers: s19-s19 CRISPR array Location: 234618-234712 bp Num of repeats: 2 Spacers: s19-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91663-92884 bp]: array | spacers
           [Locus range 234618-234712 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)