CRISPRone

CRISPRone report for GCA_900165075.1_16780_8_11

♦ Seq 1: FUPE01000011.1 Clostridioides difficile strain VRECD0031 genome assembly, contig: ERS716998SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 67333 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47458-47551 bp Zoom in on locus 1 x2 CRISPR array Location: 47458-47551 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 47458-47551 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47458-47551 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPE01000004.1 Clostridioides difficile strain VRECD0031 genome assembly, contig: ERS716998SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 462195 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 199780-209636 bp Zoom in on locus 1 x5 Gene: pfam13280:WYL Type: other Location: 199780-200694 bp Gene: pfam01881:cas6 Type: other Location: 200715-201509 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 201515-203392 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 203394-204308 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 204310-205011 bp Gene: COG1203:cas3 Type: Type-I Location: 205022-207343 bp Gene: pfam01930:cas4 Type: Type-I Location: 207358-207909 bp Gene: cd09722:cas1 Type: universal Location: 207912-208892 bp Gene: cd09725:cas2 Type: universal Location: 208895-209161 bp CRISPR array Location: 209345-209636 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 209345-209636 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 209345-209636 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPE01000002.1 Clostridioides difficile strain VRECD0031 genome assembly, contig: ERS716998SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 669072 bp; # of CRISPR array = 7; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 431695-431923 bp 2 Locus 2: 542247-543003 bp 3 Locus 3: 632526-640798 bp Zoom in on locus 1 x4 Zoom in on locus 2 x12 Zoom in on locus 3 x7 x9 x4 x3 x10 CRISPR array Location: 431695-431923 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 431695-431923 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 542247-543003 bp Num of repeats: 12 Spacers: s4-s14 CRISPR array Location: 542247-543003 bp Num of repeats: 12 Spacers: s4-s14 CRISPR array Location: 632526-632951 bp Num of repeats: 7 Spacers: s15-s20 CRISPR array Location: 632526-632951 bp Num of repeats: 7 Spacers: s15-s20 CRISPR array Location: 633553-634109 bp Num of repeats: 9 Spacers: s21-s28 CRISPR array Location: 633553-634109 bp Num of repeats: 9 Spacers: s21-s28 CRISPR array Location: 636210-636436 bp Num of repeats: 4 Spacers: s29-s31 CRISPR array Location: 636210-636436 bp Num of repeats: 4 Spacers: s29-s31 CRISPR array Location: 638298-638459 bp Num of repeats: 3 Spacers: s32-s33 CRISPR array Location: 638298-638459 bp Num of repeats: 3 Spacers: s32-s33 CRISPR array Location: 640171-640798 bp Num of repeats: 10 Spacers: s34-s42 CRISPR array Location: 640171-640798 bp Num of repeats: 10 Spacers: s34-s42 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 431695-431923 bp]: array | spacers
           [Locus range 542247-543003 bp]: array | spacers
           [Locus range 632526-632951 bp]: array | spacers
           [Locus range 633553-634109 bp]: array | spacers
           [Locus range 636210-636436 bp]: array | spacers
           [Locus range 638298-638459 bp]: array | spacers
           [Locus range 640171-640798 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUPE01000001.1 Clostridioides difficile strain VRECD0031 genome assembly, contig: ERS716998SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1120275 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110762-112640 bp 2 Locus 2: 408791-409084 bp 3 Locus 3: 771356-771841 bp 4 Locus 4: 967227-975092 bp Zoom in on locus 1 x29 Zoom in on locus 2 x5 Zoom in on locus 3 x8 Zoom in on locus 4 CRISPR array Location: 110762-112640 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 110762-112640 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 408791-409084 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 408791-409084 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 771356-771841 bp Num of repeats: 8 Spacers: s33-s39 CRISPR array Location: 771356-771841 bp Num of repeats: 8 Spacers: s33-s39 Gene: cd09641:cas3HD Type: Type-I Location: 967227-969635 bp Gene: cd09693:cas5 Type: Type-I Location: 969662-970459 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 970475-971488 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 971508-972983 bp Gene: pfam01881:cas6 Type: other Location: 972988-973725 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 973983-975092 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 110762-112640 bp]: array | spacers
           [Locus range 408791-409084 bp]: array | spacers
           [Locus range 771356-771841 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)