CRISPRone

CRISPRone report for GCA_900165085.1_16780_8_33

♦ Seq 1: FUPF01000001.1 Clostridioides difficile strain VRECD0143 genome assembly, contig: ERS717020SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1957851 bp; # of CRISPR array = 9; # of cas gene = 8  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 385880-386107 bp 2 Locus 2: 496441-496932 bp 3 Locus 3: 588303-589665 bp 4 Locus 4: 729044-729864 bp 5 Locus 5: 1092094-1092448 bp 6 Locus 6: 1138020-1139890 bp 7 Locus 7: 1445233-1446118 bp 8 Locus 8: 1611154-1619010 bp 9 Locus 9: 1692292-1692386 bp 10 Locus 10: 1849211-1856671 bp Zoom in on locus 1 x4 Zoom in on locus 2 x8 Zoom in on locus 3 x3 x8 Zoom in on locus 4 x13 Zoom in on locus 5 x6 Zoom in on locus 6 x29 Zoom in on locus 7 x14 Zoom in on locus 8 Zoom in on locus 9 x2 Zoom in on locus 10 CRISPR array Location: 385880-386107 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 385880-386107 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 496441-496932 bp Num of repeats: 8 Spacers: s4-s10 CRISPR array Location: 496441-496932 bp Num of repeats: 8 Spacers: s4-s10 CRISPR array Location: 588303-588464 bp Num of repeats: 3 Spacers: s11-s12 CRISPR array Location: 588303-588464 bp Num of repeats: 3 Spacers: s11-s12 CRISPR array Location: 589173-589665 bp Num of repeats: 8 Spacers: s13-s19 CRISPR array Location: 589173-589665 bp Num of repeats: 8 Spacers: s13-s19 CRISPR array Location: 729044-729864 bp Num of repeats: 13 Spacers: s20-s31 CRISPR array Location: 729044-729864 bp Num of repeats: 13 Spacers: s20-s31 CRISPR array Location: 1092094-1092448 bp Num of repeats: 6 Spacers: s32-s36 CRISPR array Location: 1092094-1092448 bp Num of repeats: 6 Spacers: s32-s36 CRISPR array Location: 1138020-1139890 bp Num of repeats: 29 Spacers: s37-s64 CRISPR array Location: 1138020-1139890 bp Num of repeats: 29 Spacers: s37-s64 CRISPR array Location: 1445233-1446118 bp Num of repeats: 14 Spacers: s65-s77 CRISPR array Location: 1445233-1446118 bp Num of repeats: 14 Spacers: s65-s77 Gene: cd09641:cas3HD Type: Type-I Location: 1611154-1613562 bp Gene: cd09693:cas5 Type: Type-I Location: 1613589-1614386 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1614402-1615415 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1615435-1616901 bp Gene: pfam01881:cas6 Type: other Location: 1616906-1617643 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1617901-1619010 bp CRISPR array Location: 1692292-1692386 bp Num of repeats: 2 Spacers: s78-s78 CRISPR array Location: 1692292-1692386 bp Num of repeats: 2 Spacers: s78-s78 Gene: mkCas0179:cas2 Type: universal Location: 1849211-1850476 bp Gene: pfam00078:RT Type: other Location: 1854860-1856671 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 385880-386107 bp]: array | spacers
           [Locus range 496441-496932 bp]: array | spacers
           [Locus range 588303-588464 bp]: array | spacers
           [Locus range 589173-589665 bp]: array | spacers
           [Locus range 729044-729864 bp]: array | spacers
           [Locus range 1092094-1092448 bp]: array | spacers
           [Locus range 1138020-1139890 bp]: array | spacers
           [Locus range 1445233-1446118 bp]: array | spacers
           [Locus range 1692292-1692386 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPF01000003.1 Clostridioides difficile strain VRECD0143 genome assembly, contig: ERS717020SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 539239 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25376-32658 bp 2 Locus 2: 277047-286944 bp Zoom in on locus 1 x17 Zoom in on locus 2 x6 Gene: cd09693:cas5 Type: Type-I Location: 25376-26023 bp Gene: pfam01881:cas6 Type: other Location: 26014-26778 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 26780-27928 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 27949-29019 bp Gene: COG1203:cas3 Type: Type-I Location: 29030-31012 bp CRISPR array Location: 31579-32658 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 31579-32658 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam13280:WYL Type: other Location: 277047-277934 bp Gene: pfam01881:cas6 Type: other Location: 278012-278749 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 278755-280632 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 280634-281548 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 281550-282251 bp Gene: COG1203:cas3 Type: Type-I Location: 282262-284583 bp Gene: pfam01930:cas4 Type: Type-I Location: 284598-285149 bp Gene: cd09722:cas1 Type: universal Location: 285152-286132 bp Gene: cd09725:cas2 Type: universal Location: 286135-286401 bp CRISPR array Location: 286585-286944 bp Num of repeats: 6 Spacers: s17-s21 CRISPR array Location: 286585-286944 bp Num of repeats: 6 Spacers: s17-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31579-32658 bp]: array | spacers
           [Locus range 286585-286944 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)