CRISPRone

CRISPRone report for GCA_900165115.1_16780_8_36

♦ Seq 1: FUPJ01000019.1 Clostridioides difficile strain VRECD0146 genome assembly, contig: ERS717023SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 11282 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5625-5895 bp Zoom in on locus 1 x5 CRISPR array Location: 5625-5895 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5625-5895 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5625-5895 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPJ01000003.1 Clostridioides difficile strain VRECD0146 genome assembly, contig: ERS717023SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 592023 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 249432-249928 bp 2 Locus 2: 323335-331191 bp 3 Locus 3: 496104-496526 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x7 CRISPR array Location: 249432-249928 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 249432-249928 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 323335-324444 bp Gene: pfam01881:cas6 Type: other Location: 324702-325439 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 325444-326910 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 326930-327943 bp Gene: cd09693:cas5 Type: Type-I Location: 327959-328756 bp Gene: cd09641:cas3HD Type: Type-I Location: 328783-331191 bp CRISPR array Location: 496104-496526 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 496104-496526 bp Num of repeats: 7 Spacers: s8-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 249432-249928 bp]: array | spacers
           [Locus range 496104-496526 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPJ01000004.1 Clostridioides difficile strain VRECD0146 genome assembly, contig: ERS717023SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 526365 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 248042-260200 bp Zoom in on locus 1 x40 CRISPR array Location: 248042-250635 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 248042-250635 bp Num of repeats: 40 Spacers: s1-s39 Gene: cd09725:cas2 Type: universal Location: 250819-251085 bp Gene: cd09722:cas1 Type: universal Location: 251088-252068 bp Gene: pfam01930:cas4 Type: Type-I Location: 252071-252589 bp Gene: COG1203:cas3 Type: Type-I Location: 252637-254958 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 254969-255670 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 255672-256586 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 256588-258465 bp Gene: pfam01881:cas6 Type: other Location: 258471-259265 bp Gene: pfam13280:WYL Type: other Location: 259286-260200 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 248042-250635 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUPJ01000002.1 Clostridioides difficile strain VRECD0146 genome assembly, contig: ERS717023SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 638030 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 81188-81415 bp 2 Locus 2: 191827-192053 bp 3 Locus 3: 446531-447681 bp Zoom in on locus 1 x4 Zoom in on locus 2 x4 Zoom in on locus 3 x18 CRISPR array Location: 81188-81415 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 81188-81415 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 191827-192053 bp Num of repeats: 4 Spacers: s4-s6 CRISPR array Location: 191827-192053 bp Num of repeats: 4 Spacers: s4-s6 CRISPR array Location: 446531-447681 bp Num of repeats: 18 Spacers: s7-s23 CRISPR array Location: 446531-447681 bp Num of repeats: 18 Spacers: s7-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 81188-81415 bp]: array | spacers
           [Locus range 191827-192053 bp]: array | spacers
           [Locus range 446531-447681 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUPJ01000001.1 Clostridioides difficile strain VRECD0146 genome assembly, contig: ERS717023SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 700048 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 129320-130407 bp 2 Locus 2: 436288-436445 bp Zoom in on locus 1 x17 Zoom in on locus 2 x3 CRISPR array Location: 129320-130407 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 129320-130407 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 436288-436445 bp Num of repeats: 3 Spacers: s17-s18 CRISPR array Location: 436288-436445 bp Num of repeats: 3 Spacers: s17-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 129320-130407 bp]: array | spacers
           [Locus range 436288-436445 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)