CRISPRone

CRISPRone report for GCA_900165125.1_16780_8_37

♦ Seq 1: FUPI01000008.1 Clostridioides difficile strain VRECD0147 genome assembly, contig: ERS717024SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 218655 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10376-14912 bp 2 Locus 2: 152770-153854 bp Zoom in on locus 1 x6 x3 x10 Zoom in on locus 2 x17 CRISPR array Location: 10376-10735 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 10376-10735 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 12339-12497 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 12339-12497 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 14290-14912 bp Num of repeats: 10 Spacers: s8-s16 CRISPR array Location: 14290-14912 bp Num of repeats: 10 Spacers: s8-s16 CRISPR array Location: 152770-153854 bp Num of repeats: 17 Spacers: s17-s32 CRISPR array Location: 152770-153854 bp Num of repeats: 17 Spacers: s17-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10376-10735 bp]: array | spacers
           [Locus range 12339-12497 bp]: array | spacers
           [Locus range 14290-14912 bp]: array | spacers
           [Locus range 152770-153854 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPI01000003.1 Clostridioides difficile strain VRECD0147 genome assembly, contig: ERS717024SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 371010 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 181241-181800 bp 2 Locus 2: 292259-293016 bp Zoom in on locus 1 x9 Zoom in on locus 2 x12 CRISPR array Location: 181241-181800 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 181241-181800 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 292259-293016 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 292259-293016 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 181241-181800 bp]: array | spacers
           [Locus range 292259-293016 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPI01000009.1 Clostridioides difficile strain VRECD0147 genome assembly, contig: ERS717024SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 210614 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47156-47317 bp Zoom in on locus 1 x3 CRISPR array Location: 47156-47317 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 47156-47317 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47156-47317 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUPI01000006.1 Clostridioides difficile strain VRECD0147 genome assembly, contig: ERS717024SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 249519 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244961-245319 bp Zoom in on locus 1 x6 CRISPR array Location: 244961-245319 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 244961-245319 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 244961-245319 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUPI01000004.1 Clostridioides difficile strain VRECD0147 genome assembly, contig: ERS717024SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 314265 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44738-44832 bp 2 Locus 2: 267026-277811 bp Zoom in on locus 1 x2 Zoom in on locus 2 x20 CRISPR array Location: 44738-44832 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44738-44832 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267026-267913 bp Gene: pfam01881:cas6 Type: other Location: 267991-268728 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268734-270584 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270586-271500 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271502-272203 bp Gene: COG1203:cas3 Type: Type-I Location: 272214-274535 bp Gene: pfam01930:cas4 Type: Type-I Location: 274550-275101 bp Gene: cd09722:cas1 Type: universal Location: 275104-276084 bp Gene: cd09725:cas2 Type: universal Location: 276087-276353 bp CRISPR array Location: 276537-277811 bp Num of repeats: 20 Spacers: s2-s20 CRISPR array Location: 276537-277811 bp Num of repeats: 20 Spacers: s2-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44738-44832 bp]: array | spacers
           [Locus range 276537-277811 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUPI01000002.1 Clostridioides difficile strain VRECD0147 genome assembly, contig: ERS717024SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 504368 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 333869-334485 bp 2 Locus 2: 497757-504258 bp Zoom in on locus 1 x10 Zoom in on locus 2 CRISPR array Location: 333869-334485 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 333869-334485 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 497757-500165 bp Gene: cd09693:cas5 Type: Type-I Location: 500192-500989 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 501005-502021 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 502041-503516 bp Gene: pfam01881:cas6 Type: other Location: 503521-504258 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 333869-334485 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)