CRISPRone

CRISPRone report for GCA_900165145.1_16780_8_39

♦ Seq 1: FUPL01000019.1 Clostridioides difficile strain VRECD0149 genome assembly, contig: ERS717026SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 65197 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60207-61356 bp Zoom in on locus 1 x18 CRISPR array Location: 60207-61356 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 60207-61356 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60207-61356 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPL01000003.1 Clostridioides difficile strain VRECD0149 genome assembly, contig: ERS717026SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 320943 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254843-265980 bp Zoom in on locus 1 x25 CRISPR array Location: 254843-256442 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 254843-256442 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 256626-256892 bp Gene: cd09722:cas1 Type: universal Location: 256895-257875 bp Gene: pfam01930:cas4 Type: Type-I Location: 257878-258396 bp Gene: COG1203:cas3 Type: Type-I Location: 258444-260765 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 260776-261477 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 261479-262393 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 262395-264245 bp Gene: pfam01881:cas6 Type: other Location: 264251-265045 bp Gene: pfam13280:WYL Type: other Location: 265066-265980 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 254843-256442 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPL01000006.1 Clostridioides difficile strain VRECD0149 genome assembly, contig: ERS717026SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 223570 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4218-4575 bp Zoom in on locus 1 x6 CRISPR array Location: 4218-4575 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4218-4575 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4218-4575 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUPL01000012.1 Clostridioides difficile strain VRECD0149 genome assembly, contig: ERS717026SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 160191 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47260-47421 bp Zoom in on locus 1 x3 CRISPR array Location: 47260-47421 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 47260-47421 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47260-47421 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUPL01000001.1 Clostridioides difficile strain VRECD0149 genome assembly, contig: ERS717026SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 453122 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 167271-167364 bp 2 Locus 2: 230537-231294 bp 3 Locus 3: 322151-327082 bp Zoom in on locus 1 x2 Zoom in on locus 2 x12 Zoom in on locus 3 x7 x4 x14 CRISPR array Location: 167271-167364 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 167271-167364 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 230537-231294 bp Num of repeats: 12 Spacers: s2-s12 CRISPR array Location: 230537-231294 bp Num of repeats: 12 Spacers: s2-s12 CRISPR array Location: 322151-322575 bp Num of repeats: 7 Spacers: s13-s18 CRISPR array Location: 322151-322575 bp Num of repeats: 7 Spacers: s13-s18 CRISPR array Location: 324179-324403 bp Num of repeats: 4 Spacers: s19-s21 CRISPR array Location: 324179-324403 bp Num of repeats: 4 Spacers: s19-s21 CRISPR array Location: 326196-327082 bp Num of repeats: 14 Spacers: s22-s34 CRISPR array Location: 326196-327082 bp Num of repeats: 14 Spacers: s22-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 167271-167364 bp]: array | spacers
           [Locus range 230537-231294 bp]: array | spacers
           [Locus range 322151-322575 bp]: array | spacers
           [Locus range 324179-324403 bp]: array | spacers
           [Locus range 326196-327082 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUPL01000004.1 Clostridioides difficile strain VRECD0149 genome assembly, contig: ERS717026SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 256854 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 85957-86573 bp 2 Locus 2: 249845-256346 bp Zoom in on locus 1 x10 Zoom in on locus 2 CRISPR array Location: 85957-86573 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 85957-86573 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 249845-252253 bp Gene: cd09693:cas5 Type: Type-I Location: 252280-253077 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 253093-254109 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 254129-255604 bp Gene: pfam01881:cas6 Type: other Location: 255609-256346 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 85957-86573 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUPL01000007.1 Clostridioides difficile strain VRECD0149 genome assembly, contig: ERS717026SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 221331 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 129190-129749 bp Zoom in on locus 1 x9 CRISPR array Location: 129190-129749 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 129190-129749 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 129190-129749 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)