CRISPRone

CRISPRone report for GCA_900165155.1_16780_8_40

♦ Seq 1: FUPM01000005.1 Clostridioides difficile strain VRECD0150 genome assembly, contig: ERS717027SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 384078 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63724-64807 bp 2 Locus 2: 113768-113862 bp 3 Locus 3: 336065-346850 bp Zoom in on locus 1 x17 Zoom in on locus 2 x2 Zoom in on locus 3 x20 CRISPR array Location: 63724-64807 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 63724-64807 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 113768-113862 bp Num of repeats: 2 Spacers: s17-s17 CRISPR array Location: 113768-113862 bp Num of repeats: 2 Spacers: s17-s17 Gene: pfam13280:WYL Type: other Location: 336065-336952 bp Gene: pfam01881:cas6 Type: other Location: 337030-337767 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 337773-339623 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 339625-340539 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 340541-341242 bp Gene: COG1203:cas3 Type: Type-I Location: 341253-343574 bp Gene: pfam01930:cas4 Type: Type-I Location: 343589-344140 bp Gene: cd09722:cas1 Type: universal Location: 344143-345123 bp Gene: cd09725:cas2 Type: universal Location: 345126-345392 bp CRISPR array Location: 345576-346850 bp Num of repeats: 20 Spacers: s18-s36 CRISPR array Location: 345576-346850 bp Num of repeats: 20 Spacers: s18-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63724-64807 bp]: array | spacers
           [Locus range 113768-113862 bp]: array | spacers
           [Locus range 345576-346850 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPM01000002.1 Clostridioides difficile strain VRECD0150 genome assembly, contig: ERS717027SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 577620 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 85620-86236 bp 2 Locus 2: 249508-257829 bp 3 Locus 3: 331112-331469 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 85620-86236 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 85620-86236 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 249508-251916 bp Gene: cd09693:cas5 Type: Type-I Location: 251943-252740 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 252756-253772 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 253792-255267 bp Gene: pfam01881:cas6 Type: other Location: 255272-256009 bp Gene: unk Type: unknown Location: 256110-256286 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 256720-257829 bp CRISPR array Location: 331112-331469 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 331112-331469 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 85620-86236 bp]: array | spacers
           [Locus range 331112-331469 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPM01000009.1 Clostridioides difficile strain VRECD0150 genome assembly, contig: ERS717027SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 149095 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10639-15175 bp Zoom in on locus 1 x6 x3 x10 CRISPR array Location: 10639-10998 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 10639-10998 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 12602-12760 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 12602-12760 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 14553-15175 bp Num of repeats: 10 Spacers: s8-s16 CRISPR array Location: 14553-15175 bp Num of repeats: 10 Spacers: s8-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10639-10998 bp]: array | spacers
           [Locus range 12602-12760 bp]: array | spacers
           [Locus range 14553-15175 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUPM01000004.1 Clostridioides difficile strain VRECD0150 genome assembly, contig: ERS717027SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 525887 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 336233-336792 bp 2 Locus 2: 447113-447870 bp Zoom in on locus 1 x9 Zoom in on locus 2 x12 CRISPR array Location: 336233-336792 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 336233-336792 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 447113-447870 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 447113-447870 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 336233-336792 bp]: array | spacers
           [Locus range 447113-447870 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUPM01000003.1 Clostridioides difficile strain VRECD0150 genome assembly, contig: ERS717027SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 569182 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 272916-273076 bp Zoom in on locus 1 x3 CRISPR array Location: 272916-273076 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 272916-273076 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 272916-273076 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)