CRISPRone

CRISPRone report for GCA_900165175.1_16780_8_42

♦ Seq 1: FUPO01000003.1 Clostridioides difficile strain VRECD0152 genome assembly, contig: ERS717029SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 570235 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 168484-168911 bp 2 Locus 2: 372445-372867 bp 3 Locus 3: 489216-489975 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 Zoom in on locus 3 x12 CRISPR array Location: 168484-168911 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 168484-168911 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 372445-372867 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 372445-372867 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 489216-489975 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 489216-489975 bp Num of repeats: 12 Spacers: s13-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 168484-168911 bp]: array | spacers
           [Locus range 372445-372867 bp]: array | spacers
           [Locus range 489216-489975 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPO01000004.1 Clostridioides difficile strain VRECD0152 genome assembly, contig: ERS717029SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 519402 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20187-20281 bp Zoom in on locus 1 x2 CRISPR array Location: 20187-20281 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 20187-20281 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20187-20281 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPO01000001.1 Clostridioides difficile strain VRECD0152 genome assembly, contig: ERS717029SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1527006 bp; # of CRISPR array = 6; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 166141-168116 bp 2 Locus 2: 347520-349260 bp 3 Locus 3: 696433-696658 bp 4 Locus 4: 1037994-1038220 bp 5 Locus 5: 1203977-1211842 bp 6 Locus 6: 1286063-1286619 bp Zoom in on locus 1 x9 x13 Zoom in on locus 2 x27 Zoom in on locus 3 x4 Zoom in on locus 4 x4 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 166141-166696 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 166141-166696 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 167298-168116 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 167298-168116 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 347520-349260 bp Num of repeats: 27 Spacers: s21-s46 CRISPR array Location: 347520-349260 bp Num of repeats: 27 Spacers: s21-s46 CRISPR array Location: 696433-696658 bp Num of repeats: 4 Spacers: s47-s49 CRISPR array Location: 696433-696658 bp Num of repeats: 4 Spacers: s47-s49 CRISPR array Location: 1037994-1038220 bp Num of repeats: 4 Spacers: s50-s52 CRISPR array Location: 1037994-1038220 bp Num of repeats: 4 Spacers: s50-s52 Gene: cd09641:cas3HD Type: Type-I Location: 1203977-1206385 bp Gene: cd09693:cas5 Type: Type-I Location: 1206412-1207209 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1207225-1208238 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1208258-1209733 bp Gene: pfam01881:cas6 Type: other Location: 1209738-1210475 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1210733-1211842 bp CRISPR array Location: 1286063-1286619 bp Num of repeats: 9 Spacers: s53-s60 CRISPR array Location: 1286063-1286619 bp Num of repeats: 9 Spacers: s53-s60 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 166141-166696 bp]: array | spacers
           [Locus range 167298-168116 bp]: array | spacers
           [Locus range 347520-349260 bp]: array | spacers
           [Locus range 696433-696658 bp]: array | spacers
           [Locus range 1037994-1038220 bp]: array | spacers
           [Locus range 1286063-1286619 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)