CRISPRone

CRISPRone report for GCA_900165185.1_16780_8_43

♦ Seq 1: FUPP01000002.1 Clostridioides difficile strain VRECD0154 genome assembly, contig: ERS717030SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 547443 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 105144-105635 bp 2 Locus 2: 215923-216279 bp Zoom in on locus 1 x8 Zoom in on locus 2 x6 CRISPR array Location: 105144-105635 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 105144-105635 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 215923-216279 bp Num of repeats: 6 Spacers: s8-s12 CRISPR array Location: 215923-216279 bp Num of repeats: 6 Spacers: s8-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 105144-105635 bp]: array | spacers
           [Locus range 215923-216279 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPP01000003.1 Clostridioides difficile strain VRECD0154 genome assembly, contig: ERS717030SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 414616 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 307278-307372 bp Zoom in on locus 1 x2 CRISPR array Location: 307278-307372 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 307278-307372 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 307278-307372 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPP01000001.1 Clostridioides difficile strain VRECD0154 genome assembly, contig: ERS717030SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1223688 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 72479-73561 bp 2 Locus 2: 392039-392264 bp 3 Locus 3: 740364-741050 bp 4 Locus 4: 903022-911339 bp 5 Locus 5: 984621-984781 bp Zoom in on locus 1 x17 Zoom in on locus 2 x4 Zoom in on locus 3 x11 Zoom in on locus 4 Zoom in on locus 5 x3 CRISPR array Location: 72479-73561 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 72479-73561 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 392039-392264 bp Num of repeats: 4 Spacers: s17-s19 CRISPR array Location: 392039-392264 bp Num of repeats: 4 Spacers: s17-s19 CRISPR array Location: 740364-741050 bp Num of repeats: 11 Spacers: s20-s29 CRISPR array Location: 740364-741050 bp Num of repeats: 11 Spacers: s20-s29 Gene: cd09641:cas3HD Type: Type-I Location: 903022-905430 bp Gene: cd09693:cas5 Type: Type-I Location: 905457-906254 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 906270-907283 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 907303-908778 bp Gene: pfam01881:cas6 Type: other Location: 908783-909520 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 910230-911339 bp CRISPR array Location: 984621-984781 bp Num of repeats: 3 Spacers: s30-s31 CRISPR array Location: 984621-984781 bp Num of repeats: 3 Spacers: s30-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 72479-73561 bp]: array | spacers
           [Locus range 392039-392264 bp]: array | spacers
           [Locus range 740364-741050 bp]: array | spacers
           [Locus range 984621-984781 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUPP01000006.1 Clostridioides difficile strain VRECD0154 genome assembly, contig: ERS717030SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 212210 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 166472-177052 bp Zoom in on locus 1 x16 Gene: pfam13280:WYL Type: other Location: 166472-167386 bp Gene: pfam01881:cas6 Type: other Location: 167407-168201 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 168207-170084 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 170086-171000 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 171002-171703 bp Gene: cd09641:cas3HD Type: Type-I Location: 171714-174035 bp Gene: pfam01930:cas4 Type: Type-I Location: 174050-174601 bp Gene: cd09722:cas1 Type: universal Location: 174604-175584 bp Gene: cd09725:cas2 Type: universal Location: 175587-175853 bp CRISPR array Location: 176037-177052 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 176037-177052 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 176037-177052 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)