CRISPRone

CRISPRone report for GCA_900165195.1_16780_8_44

♦ Seq 1: FUPQ01000003.1 Clostridioides difficile strain VRECD0155 genome assembly, contig: ERS717031SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 519042 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20253-20347 bp Zoom in on locus 1 x2 CRISPR array Location: 20253-20347 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 20253-20347 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20253-20347 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPQ01000006.1 Clostridioides difficile strain VRECD0155 genome assembly, contig: ERS717031SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 232266 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135754-137494 bp Zoom in on locus 1 x27 CRISPR array Location: 135754-137494 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 135754-137494 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135754-137494 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPQ01000002.1 Clostridioides difficile strain VRECD0155 genome assembly, contig: ERS717031SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 626249 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14628-16602 bp 2 Locus 2: 114461-115219 bp 3 Locus 3: 231568-231989 bp 4 Locus 4: 435524-435950 bp Zoom in on locus 1 x13 x9 Zoom in on locus 2 x12 Zoom in on locus 3 x7 Zoom in on locus 4 x7 CRISPR array Location: 14628-15445 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 14628-15445 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 16048-16602 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 16048-16602 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 114461-115219 bp Num of repeats: 12 Spacers: s21-s31 CRISPR array Location: 114461-115219 bp Num of repeats: 12 Spacers: s21-s31 CRISPR array Location: 231568-231989 bp Num of repeats: 7 Spacers: s32-s37 CRISPR array Location: 231568-231989 bp Num of repeats: 7 Spacers: s32-s37 CRISPR array Location: 435524-435950 bp Num of repeats: 7 Spacers: s38-s43 CRISPR array Location: 435524-435950 bp Num of repeats: 7 Spacers: s38-s43 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14628-15445 bp]: array | spacers
           [Locus range 16048-16602 bp]: array | spacers
           [Locus range 114461-115219 bp]: array | spacers
           [Locus range 231568-231989 bp]: array | spacers
           [Locus range 435524-435950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUPQ01000001.1 Clostridioides difficile strain VRECD0155 genome assembly, contig: ERS717031SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1064307 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 240367-240924 bp 2 Locus 2: 315284-323149 bp 3 Locus 3: 488906-489133 bp 4 Locus 4: 830641-830867 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x4 Zoom in on locus 4 x4 CRISPR array Location: 240367-240924 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 240367-240924 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 315284-316393 bp Gene: pfam01881:cas6 Type: other Location: 316651-317388 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 317393-318868 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 318888-319901 bp Gene: cd09693:cas5 Type: Type-I Location: 319917-320714 bp Gene: cd09641:cas3HD Type: Type-I Location: 320741-323149 bp CRISPR array Location: 488906-489133 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 488906-489133 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 830641-830867 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 830641-830867 bp Num of repeats: 4 Spacers: s12-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 240367-240924 bp]: array | spacers
           [Locus range 488906-489133 bp]: array | spacers
           [Locus range 830641-830867 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)