CRISPRone

CRISPRone report for GCA_900165205.1_16780_8_45

♦ Seq 1: FUPR01000005.1 Clostridioides difficile strain VRECD0156 genome assembly, contig: ERS717032SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 309156 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56613-57432 bp 2 Locus 2: 197747-199108 bp 3 Locus 3: 290926-291416 bp Zoom in on locus 1 x13 Zoom in on locus 2 x8 x3 Zoom in on locus 3 x8 CRISPR array Location: 56613-57432 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 56613-57432 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 197747-198238 bp Num of repeats: 8 Spacers: s13-s19 CRISPR array Location: 197747-198238 bp Num of repeats: 8 Spacers: s13-s19 CRISPR array Location: 198948-199108 bp Num of repeats: 3 Spacers: s20-s21 CRISPR array Location: 198948-199108 bp Num of repeats: 3 Spacers: s20-s21 CRISPR array Location: 290926-291416 bp Num of repeats: 8 Spacers: s22-s28 CRISPR array Location: 290926-291416 bp Num of repeats: 8 Spacers: s22-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56613-57432 bp]: array | spacers
           [Locus range 197747-198238 bp]: array | spacers
           [Locus range 198948-199108 bp]: array | spacers
           [Locus range 290926-291416 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPR01000003.1 Clostridioides difficile strain VRECD0156 genome assembly, contig: ERS717032SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 478215 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91944-92170 bp Zoom in on locus 1 x4 CRISPR array Location: 91944-92170 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 91944-92170 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91944-92170 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPR01000001.1 Clostridioides difficile strain VRECD0156 genome assembly, contig: ERS717032SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1175345 bp; # of CRISPR array = 4; # of cas gene = 8  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 105759-113219 bp 2 Locus 2: 270044-270139 bp 3 Locus 3: 343420-351276 bp 4 Locus 4: 516312-517198 bp 5 Locus 5: 822540-824411 bp 6 Locus 6: 869982-870337 bp Zoom in on locus 1 Zoom in on locus 2 x2 Zoom in on locus 3 Zoom in on locus 4 x14 Zoom in on locus 5 x29 Zoom in on locus 6 x6 Gene: pfam00078:RT Type: other Location: 105759-107570 bp Gene: mkCas0179:cas2 Type: universal Location: 111954-113219 bp CRISPR array Location: 270044-270139 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 270044-270139 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 343420-344529 bp Gene: pfam01881:cas6 Type: other Location: 344787-345524 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 345529-346995 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 347015-348028 bp Gene: cd09693:cas5 Type: Type-I Location: 348044-348841 bp Gene: cd09641:cas3HD Type: Type-I Location: 348868-351276 bp CRISPR array Location: 516312-517198 bp Num of repeats: 14 Spacers: s2-s14 CRISPR array Location: 516312-517198 bp Num of repeats: 14 Spacers: s2-s14 CRISPR array Location: 822540-824411 bp Num of repeats: 29 Spacers: s15-s42 CRISPR array Location: 822540-824411 bp Num of repeats: 29 Spacers: s15-s42 CRISPR array Location: 869982-870337 bp Num of repeats: 6 Spacers: s43-s47 CRISPR array Location: 869982-870337 bp Num of repeats: 6 Spacers: s43-s47 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 270044-270139 bp]: array | spacers
           [Locus range 516312-517198 bp]: array | spacers
           [Locus range 822540-824411 bp]: array | spacers
           [Locus range 869982-870337 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUPR01000010.1 Clostridioides difficile strain VRECD0156 genome assembly, contig: ERS717032SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 133819 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 101330-108611 bp Zoom in on locus 1 x17 CRISPR array Location: 101330-102408 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 101330-102408 bp Num of repeats: 17 Spacers: s1-s16 Gene: COG1203:cas3 Type: Type-I Location: 102975-104957 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 104968-106038 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 106059-107207 bp Gene: pfam01881:cas6 Type: other Location: 107209-107973 bp Gene: cd09693:cas5 Type: Type-I Location: 107964-108611 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 101330-102408 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUPR01000004.1 Clostridioides difficile strain VRECD0156 genome assembly, contig: ERS717032SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 403391 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252230-262153 bp Zoom in on locus 1 x6 CRISPR array Location: 252230-252588 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 252230-252588 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09725:cas2 Type: universal Location: 252772-253038 bp Gene: cd09722:cas1 Type: universal Location: 253041-254021 bp Gene: pfam01930:cas4 Type: Type-I Location: 254024-254542 bp Gene: COG1203:cas3 Type: Type-I Location: 254590-256911 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 256922-257623 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 257625-258539 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 258541-260418 bp Gene: pfam01881:cas6 Type: other Location: 260424-261218 bp Gene: pfam13280:WYL Type: other Location: 261239-262153 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252230-252588 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)