CRISPRone

CRISPRone report for GCA_900165225.1_16780_8_65

♦ Seq 1: FUPU01000018.1 Clostridioides difficile strain VRECD0063 genome assembly, contig: ERS717052SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 14090 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5024-5251 bp Zoom in on locus 1 x4 CRISPR array Location: 5024-5251 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5024-5251 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5024-5251 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPU01000001.1 Clostridioides difficile strain VRECD0063 genome assembly, contig: ERS717052SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1169410 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38323-38684 bp 2 Locus 2: 323690-323851 bp 3 Locus 3: 479306-490768 bp 4 Locus 4: 680271-681021 bp 5 Locus 5: 842989-850854 bp 6 Locus 6: 924102-924659 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x37 Zoom in on locus 4 x12 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 38323-38684 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38323-38684 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 323690-323851 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 323690-323851 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 479306-479596 bp Gene: cd09722:cas1 Type: universal Location: 479807-480814 bp Gene: pfam01930:cas4 Type: Type-I Location: 480840-481334 bp CRISPR array Location: 481419-483826 bp Num of repeats: 37 Spacers: s8-s43 CRISPR array Location: 481419-483826 bp Num of repeats: 37 Spacers: s8-s43 Gene: cd09641:cas3HD Type: Type-I Location: 484016-486574 bp Gene: cd09693:cas5 Type: Type-I Location: 486598-487338 bp Gene: pfam05107:cas7b Type: Type-I Location: 487340-488329 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 488322-490061 bp Gene: cd09652:cas6 Type: other Location: 490073-490768 bp CRISPR array Location: 680271-681021 bp Num of repeats: 12 Spacers: s44-s54 CRISPR array Location: 680271-681021 bp Num of repeats: 12 Spacers: s44-s54 Gene: cd09641:cas3HD Type: Type-I Location: 842989-845397 bp Gene: cd09693:cas5 Type: Type-I Location: 845424-846221 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 846237-847250 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 847270-848745 bp Gene: pfam01881:cas6 Type: other Location: 848750-849487 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 849745-850854 bp CRISPR array Location: 924102-924659 bp Num of repeats: 9 Spacers: s55-s62 CRISPR array Location: 924102-924659 bp Num of repeats: 9 Spacers: s55-s62 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38323-38684 bp]: array | spacers
           [Locus range 323690-323851 bp]: array | spacers
           [Locus range 481419-483826 bp]: array | spacers
           [Locus range 680271-681021 bp]: array | spacers
           [Locus range 924102-924659 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPU01000002.1 Clostridioides difficile strain VRECD0063 genome assembly, contig: ERS717052SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 598538 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 383894-384315 bp 2 Locus 2: 494609-494836 bp 3 Locus 3: 584584-588001 bp Zoom in on locus 1 x7 Zoom in on locus 2 x4 Zoom in on locus 3 x5 x13 CRISPR array Location: 383894-384315 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 383894-384315 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 494609-494836 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 494609-494836 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 584584-584875 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 584584-584875 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 587178-588001 bp Num of repeats: 13 Spacers: s14-s25 CRISPR array Location: 587178-588001 bp Num of repeats: 13 Spacers: s14-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 383894-384315 bp]: array | spacers
           [Locus range 494609-494836 bp]: array | spacers
           [Locus range 584584-584875 bp]: array | spacers
           [Locus range 587178-588001 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)