CRISPRone

CRISPRone report for GCA_900165255.1_16780_8_71

♦ Seq 1: FUPW01000014.1 Clostridioides difficile strain VRECD0090 genome assembly, contig: ERS717058SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 68654 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63664-64813 bp Zoom in on locus 1 x18 CRISPR array Location: 63664-64813 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63664-64813 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63664-64813 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPW01000005.1 Clostridioides difficile strain VRECD0090 genome assembly, contig: ERS717058SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 320916 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 229531-234088 bp Zoom in on locus 1 x8 x4 x5 CRISPR array Location: 229531-230025 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 229531-230025 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 231888-232113 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 231888-232113 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 233797-234088 bp Num of repeats: 5 Spacers: s11-s14 CRISPR array Location: 233797-234088 bp Num of repeats: 5 Spacers: s11-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 229531-230025 bp]: array | spacers
           [Locus range 231888-232113 bp]: array | spacers
           [Locus range 233797-234088 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPW01000002.1 Clostridioides difficile strain VRECD0090 genome assembly, contig: ERS717058SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 530945 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252727-263864 bp 2 Locus 2: 486041-486134 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 252727-254326 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 252727-254326 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 254510-254776 bp Gene: cd09722:cas1 Type: universal Location: 254779-255759 bp Gene: pfam01930:cas4 Type: Type-I Location: 255762-256280 bp Gene: COG1203:cas3 Type: Type-I Location: 256328-258649 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258660-259361 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259363-260277 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260279-262129 bp Gene: pfam01881:cas6 Type: other Location: 262135-262929 bp Gene: pfam13280:WYL Type: other Location: 262950-263864 bp CRISPR array Location: 486041-486134 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 486041-486134 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252727-254326 bp]: array | spacers
           [Locus range 486041-486134 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUPW01000009.1 Clostridioides difficile strain VRECD0090 genome assembly, contig: ERS717058SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 192056 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 172228-172984 bp Zoom in on locus 1 x12 CRISPR array Location: 172228-172984 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 172228-172984 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 172228-172984 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUPW01000001.1 Clostridioides difficile strain VRECD0090 genome assembly, contig: ERS717058SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 571329 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244814-245172 bp 2 Locus 2: 318454-326775 bp 3 Locus 3: 490047-490664 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 244814-245172 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 244814-245172 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318454-319563 bp Gene: unk Type: unknown Location: 319997-320173 bp Gene: pfam01881:cas6 Type: other Location: 320274-321011 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 321016-322491 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322511-323527 bp Gene: cd09693:cas5 Type: Type-I Location: 323543-324340 bp Gene: cd09641:cas3HD Type: Type-I Location: 324367-326775 bp CRISPR array Location: 490047-490664 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 490047-490664 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244814-245172 bp]: array | spacers
           [Locus range 490047-490664 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUPW01000003.1 Clostridioides difficile strain VRECD0090 genome assembly, contig: ERS717058SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 440207 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140130-140290 bp Zoom in on locus 1 x3 CRISPR array Location: 140130-140290 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 140130-140290 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 140130-140290 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUPW01000008.1 Clostridioides difficile strain VRECD0090 genome assembly, contig: ERS717058SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 217556 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91674-92232 bp Zoom in on locus 1 x9 CRISPR array Location: 91674-92232 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 91674-92232 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91674-92232 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)