CRISPRone

CRISPRone report for GCA_900165265.1_16780_8_72

♦ Seq 1: FUPX01000002.1 Clostridioides difficile strain VRECD0095 genome assembly, contig: ERS717059SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 582414 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9516-10400 bp 2 Locus 2: 323811-324101 bp Zoom in on locus 1 x14 Zoom in on locus 2 x5 CRISPR array Location: 9516-10400 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 9516-10400 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 323811-324101 bp Num of repeats: 5 Spacers: s14-s17 CRISPR array Location: 323811-324101 bp Num of repeats: 5 Spacers: s14-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9516-10400 bp]: array | spacers
           [Locus range 323811-324101 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPX01000009.1 Clostridioides difficile strain VRECD0095 genome assembly, contig: ERS717059SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 210288 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91007-91300 bp Zoom in on locus 1 x5 CRISPR array Location: 91007-91300 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 91007-91300 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91007-91300 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPX01000001.1 Clostridioides difficile strain VRECD0095 genome assembly, contig: ERS717059SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 626712 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 282716-282942 bp 2 Locus 2: 356223-364091 bp 3 Locus 3: 529044-529404 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 282716-282942 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 282716-282942 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 356223-357332 bp Gene: pfam01881:cas6 Type: other Location: 357590-358327 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 358332-359807 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 359827-360843 bp Gene: cd09693:cas5 Type: Type-I Location: 360859-361656 bp Gene: cd09641:cas3HD Type: Type-I Location: 361683-364091 bp CRISPR array Location: 529044-529404 bp Num of repeats: 6 Spacers: s4-s8 CRISPR array Location: 529044-529404 bp Num of repeats: 6 Spacers: s4-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 282716-282942 bp]: array | spacers
           [Locus range 529044-529404 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUPX01000004.1 Clostridioides difficile strain VRECD0095 genome assembly, contig: ERS717059SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 277246 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 85974-86926 bp Zoom in on locus 1 x15 CRISPR array Location: 85974-86926 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 85974-86926 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 85974-86926 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUPX01000008.1 Clostridioides difficile strain VRECD0095 genome assembly, contig: ERS717059SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 244862 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18208-18503 bp 2 Locus 2: 110015-113670 bp Zoom in on locus 1 x5 Zoom in on locus 2 x3 x17 x3 CRISPR array Location: 18208-18503 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 18208-18503 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 110015-110176 bp Num of repeats: 3 Spacers: s5-s6 CRISPR array Location: 110015-110176 bp Num of repeats: 3 Spacers: s5-s6 CRISPR array Location: 110778-111865 bp Num of repeats: 17 Spacers: s7-s22 CRISPR array Location: 110778-111865 bp Num of repeats: 17 Spacers: s7-s22 CRISPR array Location: 113509-113670 bp Num of repeats: 3 Spacers: s23-s24 CRISPR array Location: 113509-113670 bp Num of repeats: 3 Spacers: s23-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18208-18503 bp]: array | spacers
           [Locus range 110015-110176 bp]: array | spacers
           [Locus range 110778-111865 bp]: array | spacers
           [Locus range 113509-113670 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)