CRISPRone

CRISPRone report for GCA_900165285.1_16780_8_74

♦ Seq 1: FUPZ01000001.1 Clostridioides difficile strain VRECD0117 genome assembly, contig: ERS717061SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 577695 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257775-268782 bp 2 Locus 2: 491071-491164 bp 3 Locus 3: 516376-517526 bp Zoom in on locus 1 x23 Zoom in on locus 2 x2 Zoom in on locus 3 x18 CRISPR array Location: 257775-259244 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 257775-259244 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 259428-259694 bp Gene: cd09722:cas1 Type: universal Location: 259697-260677 bp Gene: pfam01930:cas4 Type: Type-I Location: 260680-261198 bp Gene: COG1203:cas3 Type: Type-I Location: 261246-263567 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 263578-264279 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 264281-265195 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 265197-267047 bp Gene: pfam01881:cas6 Type: other Location: 267053-267847 bp Gene: pfam13280:WYL Type: other Location: 267868-268782 bp CRISPR array Location: 491071-491164 bp Num of repeats: 2 Spacers: s23-s23 CRISPR array Location: 491071-491164 bp Num of repeats: 2 Spacers: s23-s23 CRISPR array Location: 516376-517526 bp Num of repeats: 18 Spacers: s24-s40 CRISPR array Location: 516376-517526 bp Num of repeats: 18 Spacers: s24-s40 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 257775-259244 bp]: array | spacers
           [Locus range 491071-491164 bp]: array | spacers
           [Locus range 516376-517526 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUPZ01000008.1 Clostridioides difficile strain VRECD0117 genome assembly, contig: ERS717061SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 251813 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 81035-81651 bp 2 Locus 2: 244923-251424 bp Zoom in on locus 1 x10 Zoom in on locus 2 CRISPR array Location: 81035-81651 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 81035-81651 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 244923-247331 bp Gene: cd09693:cas5 Type: Type-I Location: 247358-248155 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 248171-249187 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 249207-250682 bp Gene: pfam01881:cas6 Type: other Location: 250687-251424 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 81035-81651 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUPZ01000003.1 Clostridioides difficile strain VRECD0117 genome assembly, contig: ERS717061SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 339164 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86282-86442 bp Zoom in on locus 1 x3 CRISPR array Location: 86282-86442 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 86282-86442 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86282-86442 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUPZ01000004.1 Clostridioides difficile strain VRECD0117 genome assembly, contig: ERS717061SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 319718 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 74549-74906 bp Zoom in on locus 1 x6 CRISPR array Location: 74549-74906 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 74549-74906 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 74549-74906 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUPZ01000007.1 Clostridioides difficile strain VRECD0117 genome assembly, contig: ERS717061SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 257565 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92263-92749 bp 2 Locus 2: 244360-245509 bp Zoom in on locus 1 x8 Zoom in on locus 2 x18 CRISPR array Location: 92263-92749 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 92263-92749 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 244360-245509 bp Num of repeats: 18 Spacers: s8-s24 CRISPR array Location: 244360-245509 bp Num of repeats: 18 Spacers: s8-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92263-92749 bp]: array | spacers
           [Locus range 244360-245509 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUPZ01000002.1 Clostridioides difficile strain VRECD0117 genome assembly, contig: ERS717061SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 494660 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125379-125872 bp 2 Locus 2: 236193-236684 bp 3 Locus 3: 327525-332456 bp Zoom in on locus 1 x8 Zoom in on locus 2 x8 Zoom in on locus 3 x7 x4 x14 CRISPR array Location: 125379-125872 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 125379-125872 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 236193-236684 bp Num of repeats: 8 Spacers: s8-s14 CRISPR array Location: 236193-236684 bp Num of repeats: 8 Spacers: s8-s14 CRISPR array Location: 327525-327949 bp Num of repeats: 7 Spacers: s15-s20 CRISPR array Location: 327525-327949 bp Num of repeats: 7 Spacers: s15-s20 CRISPR array Location: 329553-329777 bp Num of repeats: 4 Spacers: s21-s23 CRISPR array Location: 329553-329777 bp Num of repeats: 4 Spacers: s21-s23 CRISPR array Location: 331570-332456 bp Num of repeats: 14 Spacers: s24-s36 CRISPR array Location: 331570-332456 bp Num of repeats: 14 Spacers: s24-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 125379-125872 bp]: array | spacers
           [Locus range 236193-236684 bp]: array | spacers
           [Locus range 327525-327949 bp]: array | spacers
           [Locus range 329553-329777 bp]: array | spacers
           [Locus range 331570-332456 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)