CRISPRone

CRISPRone report for GCA_900165305.1_16780_8_77

♦ Seq 1: FUQA01000003.1 Clostridioides difficile strain VRECD0153 genome assembly, contig: ERS717064SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 403230 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252213-262136 bp Zoom in on locus 1 x6 CRISPR array Location: 252213-252571 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 252213-252571 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09725:cas2 Type: universal Location: 252755-253021 bp Gene: cd09722:cas1 Type: universal Location: 253024-254004 bp Gene: pfam01930:cas4 Type: Type-I Location: 254007-254525 bp Gene: COG1203:cas3 Type: Type-I Location: 254573-256894 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 256905-257606 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 257608-258522 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 258524-260401 bp Gene: pfam01881:cas6 Type: other Location: 260407-261201 bp Gene: pfam13280:WYL Type: other Location: 261222-262136 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252213-252571 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQA01000008.1 Clostridioides difficile strain VRECD0153 genome assembly, contig: ERS717064SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 175974 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56637-57456 bp Zoom in on locus 1 x13 CRISPR array Location: 56637-57456 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 56637-57456 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56637-57456 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQA01000001.1 Clostridioides difficile strain VRECD0153 genome assembly, contig: ERS717064SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1095124 bp; # of CRISPR array = 4; # of cas gene = 8  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 229254-229608 bp 2 Locus 2: 275180-277050 bp 3 Locus 3: 582478-583363 bp 4 Locus 4: 748399-756255 bp 5 Locus 5: 829509-829603 bp 6 Locus 6: 986428-993888 bp Zoom in on locus 1 x6 Zoom in on locus 2 x29 Zoom in on locus 3 x14 Zoom in on locus 4 Zoom in on locus 5 x2 Zoom in on locus 6 CRISPR array Location: 229254-229608 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 229254-229608 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 275180-277050 bp Num of repeats: 29 Spacers: s6-s33 CRISPR array Location: 275180-277050 bp Num of repeats: 29 Spacers: s6-s33 CRISPR array Location: 582478-583363 bp Num of repeats: 14 Spacers: s34-s46 CRISPR array Location: 582478-583363 bp Num of repeats: 14 Spacers: s34-s46 Gene: cd09641:cas3HD Type: Type-I Location: 748399-750807 bp Gene: cd09693:cas5 Type: Type-I Location: 750834-751631 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 751647-752660 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 752680-754146 bp Gene: pfam01881:cas6 Type: other Location: 754151-754888 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 755146-756255 bp CRISPR array Location: 829509-829603 bp Num of repeats: 2 Spacers: s47-s47 CRISPR array Location: 829509-829603 bp Num of repeats: 2 Spacers: s47-s47 Gene: mkCas0179:cas2 Type: universal Location: 986428-987693 bp Gene: pfam00078:RT Type: other Location: 992077-993888 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 229254-229608 bp]: array | spacers
           [Locus range 275180-277050 bp]: array | spacers
           [Locus range 582478-583363 bp]: array | spacers
           [Locus range 829509-829603 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUQA01000002.1 Clostridioides difficile strain VRECD0153 genome assembly, contig: ERS717064SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 477112 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90964-91190 bp Zoom in on locus 1 x4 CRISPR array Location: 90964-91190 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 90964-91190 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90964-91190 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUQA01000013.1 Clostridioides difficile strain VRECD0153 genome assembly, contig: ERS717064SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 92986 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24822-32104 bp Zoom in on locus 1 x17 Gene: cd09693:cas5 Type: Type-I Location: 24822-25469 bp Gene: pfam01881:cas6 Type: other Location: 25460-26224 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 26226-27374 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 27395-28465 bp Gene: COG1203:cas3 Type: Type-I Location: 28476-30458 bp CRISPR array Location: 31025-32104 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 31025-32104 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31025-32104 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUQA01000011.1 Clostridioides difficile strain VRECD0153 genome assembly, contig: ERS717064SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 133980 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8610-9971 bp 2 Locus 2: 115780-116270 bp Zoom in on locus 1 x8 x3 Zoom in on locus 2 x8 CRISPR array Location: 8610-9101 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 8610-9101 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 9811-9971 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 9811-9971 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 115780-116270 bp Num of repeats: 8 Spacers: s10-s16 CRISPR array Location: 115780-116270 bp Num of repeats: 8 Spacers: s10-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8610-9101 bp]: array | spacers
           [Locus range 9811-9971 bp]: array | spacers
           [Locus range 115780-116270 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)