CRISPRone

CRISPRone report for GCA_900165315.1_16780_8_75

♦ Seq 1: FUQE01000012.1 Clostridioides difficile strain VRECD0118 genome assembly, contig: ERS717062SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 102550 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22599-29882 bp Zoom in on locus 1 x17 Gene: cd09693:cas5 Type: Type-I Location: 22599-23246 bp Gene: pfam01881:cas6 Type: other Location: 23237-24001 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 24003-25151 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 25172-26242 bp Gene: COG1203:cas3 Type: Type-I Location: 26253-28235 bp CRISPR array Location: 28802-29882 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 28802-29882 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 28802-29882 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQE01000003.1 Clostridioides difficile strain VRECD0118 genome assembly, contig: ERS717062SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 484985 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 187285-198494 bp Zoom in on locus 1 x26 Gene: pfam13280:WYL Type: other Location: 187285-188199 bp Gene: pfam01881:cas6 Type: other Location: 188220-189014 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 189020-190870 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 190872-191786 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 191788-192489 bp Gene: COG1203:cas3 Type: Type-I Location: 192500-194821 bp Gene: pfam01930:cas4 Type: Type-I Location: 194836-195387 bp Gene: cd09722:cas1 Type: universal Location: 195390-196370 bp Gene: cd09725:cas2 Type: universal Location: 196373-196639 bp CRISPR array Location: 196823-198494 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 196823-198494 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 196823-198494 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQE01000002.1 Clostridioides difficile strain VRECD0118 genome assembly, contig: ERS717062SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 493943 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91665-92020 bp 2 Locus 2: 297625-298244 bp Zoom in on locus 1 x6 Zoom in on locus 2 x10 CRISPR array Location: 91665-92020 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 91665-92020 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 297625-298244 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 297625-298244 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91665-92020 bp]: array | spacers
           [Locus range 297625-298244 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUQE01000001.1 Clostridioides difficile strain VRECD0118 genome assembly, contig: ERS717062SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1212001 bp; # of CRISPR array = 8; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45925-46284 bp 2 Locus 2: 119553-127418 bp 3 Locus 3: 292943-294025 bp 4 Locus 4: 590504-591914 bp 5 Locus 5: 637770-637996 bp 6 Locus 6: 953074-954812 bp 7 Locus 7: 1101690-1103076 bp 8 Locus 8: 1193341-1193898 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x17 Zoom in on locus 4 x22 Zoom in on locus 5 x4 Zoom in on locus 6 x27 Zoom in on locus 7 x10 x3 Zoom in on locus 8 x9 CRISPR array Location: 45925-46284 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 45925-46284 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 119553-120662 bp Gene: pfam01881:cas6 Type: other Location: 120920-121657 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 121662-123137 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 123157-124170 bp Gene: cd09693:cas5 Type: Type-I Location: 124186-124983 bp Gene: cd09641:cas3HD Type: Type-I Location: 125010-127418 bp CRISPR array Location: 292943-294025 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 292943-294025 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 590504-591914 bp Num of repeats: 22 Spacers: s22-s42 CRISPR array Location: 590504-591914 bp Num of repeats: 22 Spacers: s22-s42 CRISPR array Location: 637770-637996 bp Num of repeats: 4 Spacers: s43-s45 CRISPR array Location: 637770-637996 bp Num of repeats: 4 Spacers: s43-s45 CRISPR array Location: 953074-954812 bp Num of repeats: 27 Spacers: s46-s71 CRISPR array Location: 953074-954812 bp Num of repeats: 27 Spacers: s46-s71 CRISPR array Location: 1101690-1102313 bp Num of repeats: 10 Spacers: s72-s80 CRISPR array Location: 1101690-1102313 bp Num of repeats: 10 Spacers: s72-s80 CRISPR array Location: 1102916-1103076 bp Num of repeats: 3 Spacers: s81-s82 CRISPR array Location: 1102916-1103076 bp Num of repeats: 3 Spacers: s81-s82 CRISPR array Location: 1193341-1193898 bp Num of repeats: 9 Spacers: s83-s90 CRISPR array Location: 1193341-1193898 bp Num of repeats: 9 Spacers: s83-s90 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45925-46284 bp]: array | spacers
           [Locus range 292943-294025 bp]: array | spacers
           [Locus range 590504-591914 bp]: array | spacers
           [Locus range 637770-637996 bp]: array | spacers
           [Locus range 953074-954812 bp]: array | spacers
           [Locus range 1101690-1102313 bp]: array | spacers
           [Locus range 1102916-1103076 bp]: array | spacers
           [Locus range 1193341-1193898 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)