CRISPRone

CRISPRone report for GCA_900165355.1_16780_8_84

♦ Seq 1: FUQF01000002.1 Clostridioides difficile strain VRECD0183 genome assembly, contig: ERS717071SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 580940 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77884-78642 bp 2 Locus 2: 195117-195538 bp 3 Locus 3: 399073-399499 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 Zoom in on locus 3 x7 CRISPR array Location: 77884-78642 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 77884-78642 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 195117-195538 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 195117-195538 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 399073-399499 bp Num of repeats: 7 Spacers: s18-s23 CRISPR array Location: 399073-399499 bp Num of repeats: 7 Spacers: s18-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 77884-78642 bp]: array | spacers
           [Locus range 195117-195538 bp]: array | spacers
           [Locus range 399073-399499 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQF01000003.1 Clostridioides difficile strain VRECD0183 genome assembly, contig: ERS717071SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 519461 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20188-20282 bp Zoom in on locus 1 x2 CRISPR array Location: 20188-20282 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 20188-20282 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20188-20282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQF01000006.1 Clostridioides difficile strain VRECD0183 genome assembly, contig: ERS717071SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 164231 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48548-50287 bp Zoom in on locus 1 x27 CRISPR array Location: 48548-50287 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 48548-50287 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 48548-50287 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUQF01000012.1 Clostridioides difficile strain VRECD0183 genome assembly, contig: ERS717071SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 76263 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59438-61413 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 59438-59993 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 59438-59993 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 60595-61413 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 60595-61413 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59438-59993 bp]: array | spacers
           [Locus range 60595-61413 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUQF01000001.1 Clostridioides difficile strain VRECD0183 genome assembly, contig: ERS717071SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1252841 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 240373-240930 bp 2 Locus 2: 315150-323015 bp 3 Locus 3: 488772-488999 bp 4 Locus 4: 830744-830970 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x4 Zoom in on locus 4 x4 CRISPR array Location: 240373-240930 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 240373-240930 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 315150-316259 bp Gene: pfam01881:cas6 Type: other Location: 316517-317254 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 317259-318734 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 318754-319767 bp Gene: cd09693:cas5 Type: Type-I Location: 319783-320580 bp Gene: cd09641:cas3HD Type: Type-I Location: 320607-323015 bp CRISPR array Location: 488772-488999 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 488772-488999 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 830744-830970 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 830744-830970 bp Num of repeats: 4 Spacers: s12-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 240373-240930 bp]: array | spacers
           [Locus range 488772-488999 bp]: array | spacers
           [Locus range 830744-830970 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)