CRISPRone

CRISPRone report for GCA_900165365.1_16780_8_85

♦ Seq 1: FUQH01000007.1 Clostridioides difficile strain VRECD0184 genome assembly, contig: ERS717072SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 191292 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18226-18781 bp Zoom in on locus 1 x9 CRISPR array Location: 18226-18781 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 18226-18781 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18226-18781 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQH01000002.1 Clostridioides difficile strain VRECD0184 genome assembly, contig: ERS717072SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 872703 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11990-12414 bp 2 Locus 2: 361076-361561 bp 3 Locus 3: 524836-533157 bp 4 Locus 4: 606437-606530 bp Zoom in on locus 1 x7 Zoom in on locus 2 x8 Zoom in on locus 3 Zoom in on locus 4 x2 CRISPR array Location: 11990-12414 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 11990-12414 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 361076-361561 bp Num of repeats: 8 Spacers: s7-s13 CRISPR array Location: 361076-361561 bp Num of repeats: 8 Spacers: s7-s13 Gene: cd09641:cas3HD Type: Type-I Location: 524836-527244 bp Gene: cd09693:cas5 Type: Type-I Location: 527271-528068 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 528084-529100 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 529120-530595 bp Gene: pfam01881:cas6 Type: other Location: 530600-531337 bp Gene: unk Type: unknown Location: 531438-531614 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 532048-533157 bp CRISPR array Location: 606437-606530 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 606437-606530 bp Num of repeats: 2 Spacers: s14-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 11990-12414 bp]: array | spacers
           [Locus range 361076-361561 bp]: array | spacers
           [Locus range 606437-606530 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQH01000001.1 Clostridioides difficile strain VRECD0184 genome assembly, contig: ERS717072SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 879227 bp; # of CRISPR array = 5; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 71912-77715 bp 2 Locus 2: 365470-365564 bp 3 Locus 3: 579455-590324 bp Zoom in on locus 1 x6 x5 x2 Zoom in on locus 2 x2 Zoom in on locus 3 x21 CRISPR array Location: 71912-72273 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 71912-72273 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 74916-75209 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 74916-75209 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 77620-77715 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 77620-77715 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 365470-365564 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 365470-365564 bp Num of repeats: 2 Spacers: s11-s11 Gene: pfam13280:WYL Type: other Location: 579455-580369 bp Gene: pfam01881:cas6 Type: other Location: 580390-581184 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 581190-583040 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 583042-583956 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 583958-584659 bp Gene: cd09641:cas3HD Type: Type-I Location: 584670-586991 bp Gene: pfam01930:cas4 Type: Type-I Location: 587006-587557 bp Gene: cd09722:cas1 Type: universal Location: 587560-588540 bp Gene: cd09725:cas2 Type: universal Location: 588543-588809 bp CRISPR array Location: 588993-590324 bp Num of repeats: 21 Spacers: s12-s31 CRISPR array Location: 588993-590324 bp Num of repeats: 21 Spacers: s12-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 71912-72273 bp]: array | spacers
           [Locus range 74916-75209 bp]: array | spacers
           [Locus range 77620-77715 bp]: array | spacers
           [Locus range 365470-365564 bp]: array | spacers
           [Locus range 588993-590324 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUQH01000017.1 Clostridioides difficile strain VRECD0184 genome assembly, contig: ERS717072SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 14229 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8706-9066 bp Zoom in on locus 1 x6 CRISPR array Location: 8706-9066 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8706-9066 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8706-9066 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUQH01000003.1 Clostridioides difficile strain VRECD0184 genome assembly, contig: ERS717072SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 512879 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3972-4396 bp 2 Locus 2: 420249-421005 bp Zoom in on locus 1 x7 Zoom in on locus 2 x12 CRISPR array Location: 3972-4396 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 3972-4396 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 420249-421005 bp Num of repeats: 12 Spacers: s7-s17 CRISPR array Location: 420249-421005 bp Num of repeats: 12 Spacers: s7-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3972-4396 bp]: array | spacers
           [Locus range 420249-421005 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)