CRISPRone

CRISPRone report for GCA_900165385.1_16780_8_91

♦ Seq 1: FUQK01000017.1 Clostridioides difficile strain VRECD0190 genome assembly, contig: ERS717078SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 68091 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3493-4445 bp Zoom in on locus 1 x15 CRISPR array Location: 3493-4445 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 3493-4445 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3493-4445 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQK01000004.1 Clostridioides difficile strain VRECD0190 genome assembly, contig: ERS717078SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 319761 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244813-245171 bp Zoom in on locus 1 x6 CRISPR array Location: 244813-245171 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 244813-245171 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 244813-245171 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQK01000002.1 Clostridioides difficile strain VRECD0190 genome assembly, contig: ERS717078SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 510797 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256186-267323 bp 2 Locus 2: 489610-489703 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 256186-257785 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 256186-257785 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 257969-258235 bp Gene: cd09722:cas1 Type: universal Location: 258238-259218 bp Gene: pfam01930:cas4 Type: Type-I Location: 259221-259739 bp Gene: COG1203:cas3 Type: Type-I Location: 259787-262108 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 262119-262820 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262822-263736 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263738-265588 bp Gene: pfam01881:cas6 Type: other Location: 265594-266388 bp Gene: pfam13280:WYL Type: other Location: 266409-267323 bp CRISPR array Location: 489610-489703 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 489610-489703 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256186-257785 bp]: array | spacers
           [Locus range 489610-489703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUQK01000001.1 Clostridioides difficile strain VRECD0190 genome assembly, contig: ERS717078SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 706284 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189864-190947 bp Zoom in on locus 1 x17 CRISPR array Location: 189864-190947 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 189864-190947 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189864-190947 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUQK01000006.1 Clostridioides difficile strain VRECD0190 genome assembly, contig: ERS717078SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 245909 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 130730-131873 bp 2 Locus 2: 226908-227664 bp Zoom in on locus 1 x18 Zoom in on locus 2 x12 CRISPR array Location: 130730-131873 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 130730-131873 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 226908-227664 bp Num of repeats: 12 Spacers: s18-s28 CRISPR array Location: 226908-227664 bp Num of repeats: 12 Spacers: s18-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 130730-131873 bp]: array | spacers
           [Locus range 226908-227664 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUQK01000005.1 Clostridioides difficile strain VRECD0190 genome assembly, contig: ERS717078SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 271547 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98976-99723 bp 2 Locus 2: 264628-271129 bp Zoom in on locus 1 x12 Zoom in on locus 2 CRISPR array Location: 98976-99723 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 98976-99723 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 264628-267036 bp Gene: cd09693:cas5 Type: Type-I Location: 267063-267860 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 267876-268892 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 268912-270387 bp Gene: pfam01881:cas6 Type: other Location: 270392-271129 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 98976-99723 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUQK01000008.1 Clostridioides difficile strain VRECD0190 genome assembly, contig: ERS717078SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 217867 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125391-125884 bp Zoom in on locus 1 x8 CRISPR array Location: 125391-125884 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 125391-125884 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 125391-125884 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FUQK01000003.1 Clostridioides difficile strain VRECD0190 genome assembly, contig: ERS717078SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 363201 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110248-110408 bp Zoom in on locus 1 x3 CRISPR array Location: 110248-110408 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110248-110408 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110248-110408 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)