CRISPRone

CRISPRone report for GCA_900165415.1_16780_8_89

♦ Seq 1: FUQN01000006.1 Clostridioides difficile strain VRECD0188 genome assembly, contig: ERS717076SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 209494 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12870-16522 bp 2 Locus 2: 144453-145604 bp Zoom in on locus 1 x3 x17 x3 Zoom in on locus 2 x18 CRISPR array Location: 12870-13030 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 12870-13030 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14675-15759 bp Num of repeats: 17 Spacers: s3-s18 CRISPR array Location: 14675-15759 bp Num of repeats: 17 Spacers: s3-s18 CRISPR array Location: 16362-16522 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 16362-16522 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 144453-145604 bp Num of repeats: 18 Spacers: s21-s37 CRISPR array Location: 144453-145604 bp Num of repeats: 18 Spacers: s21-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12870-13030 bp]: array | spacers
           [Locus range 14675-15759 bp]: array | spacers
           [Locus range 16362-16522 bp]: array | spacers
           [Locus range 144453-145604 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQN01000026.1 Clostridioides difficile strain VRECD0188 genome assembly, contig: ERS717076SCcontig000026, whole genome shotgun sequence

⇒Summary: seq-len = 15006 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5075-6291 bp Zoom in on locus 1 x19 CRISPR array Location: 5075-6291 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 5075-6291 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5075-6291 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQN01000005.1 Clostridioides difficile strain VRECD0188 genome assembly, contig: ERS717076SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 220272 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94360-94653 bp Zoom in on locus 1 x5 CRISPR array Location: 94360-94653 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 94360-94653 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 94360-94653 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUQN01000016.1 Clostridioides difficile strain VRECD0188 genome assembly, contig: ERS717076SCcontig000016, whole genome shotgun sequence

⇒Summary: seq-len = 100693 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80888-81182 bp Zoom in on locus 1 x5 CRISPR array Location: 80888-81182 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 80888-81182 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 80888-81182 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUQN01000007.1 Clostridioides difficile strain VRECD0188 genome assembly, contig: ERS717076SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 207348 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154542-154699 bp Zoom in on locus 1 x3 CRISPR array Location: 154542-154699 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 154542-154699 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 154542-154699 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUQN01000001.1 Clostridioides difficile strain VRECD0188 genome assembly, contig: ERS717076SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 623360 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75828-76118 bp 2 Locus 2: 149386-157254 bp 3 Locus 3: 322314-322931 bp Zoom in on locus 1 x5 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 75828-76118 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 75828-76118 bp Num of repeats: 5 Spacers: s1-s4 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 149386-150495 bp Gene: pfam01881:cas6 Type: other Location: 150753-151490 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 151495-152970 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 152990-154006 bp Gene: cd09693:cas5 Type: Type-I Location: 154022-154819 bp Gene: cd09641:cas3HD Type: Type-I Location: 154846-157254 bp CRISPR array Location: 322314-322931 bp Num of repeats: 10 Spacers: s5-s13 CRISPR array Location: 322314-322931 bp Num of repeats: 10 Spacers: s5-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 75828-76118 bp]: array | spacers
           [Locus range 322314-322931 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)