CRISPRone

CRISPRone report for GCA_900165435.1_16780_8_93

♦ Seq 1: FUQM01000001.1 Clostridioides difficile strain VRECD0192 genome assembly, contig: ERS717080SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1212921 bp; # of CRISPR array = 8; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46079-46373 bp 2 Locus 2: 119642-127507 bp 3 Locus 3: 292945-294027 bp 4 Locus 4: 590486-591896 bp 5 Locus 5: 637566-637792 bp 6 Locus 6: 953459-955197 bp 7 Locus 7: 1102172-1103756 bp 8 Locus 8: 1194247-1194804 bp Zoom in on locus 1 x5 Zoom in on locus 2 Zoom in on locus 3 x17 Zoom in on locus 4 x22 Zoom in on locus 5 x4 Zoom in on locus 6 x27 Zoom in on locus 7 x13 x3 Zoom in on locus 8 x9 CRISPR array Location: 46079-46373 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 46079-46373 bp Num of repeats: 5 Spacers: s1-s4 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 119642-120751 bp Gene: pfam01881:cas6 Type: other Location: 121009-121746 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 121751-123226 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 123246-124259 bp Gene: cd09693:cas5 Type: Type-I Location: 124275-125072 bp Gene: cd09641:cas3HD Type: Type-I Location: 125099-127507 bp CRISPR array Location: 292945-294027 bp Num of repeats: 17 Spacers: s5-s20 CRISPR array Location: 292945-294027 bp Num of repeats: 17 Spacers: s5-s20 CRISPR array Location: 590486-591896 bp Num of repeats: 22 Spacers: s21-s41 CRISPR array Location: 590486-591896 bp Num of repeats: 22 Spacers: s21-s41 CRISPR array Location: 637566-637792 bp Num of repeats: 4 Spacers: s42-s44 CRISPR array Location: 637566-637792 bp Num of repeats: 4 Spacers: s42-s44 CRISPR array Location: 953459-955197 bp Num of repeats: 27 Spacers: s45-s70 CRISPR array Location: 953459-955197 bp Num of repeats: 27 Spacers: s45-s70 CRISPR array Location: 1102172-1102993 bp Num of repeats: 13 Spacers: s71-s82 CRISPR array Location: 1102172-1102993 bp Num of repeats: 13 Spacers: s71-s82 CRISPR array Location: 1103596-1103756 bp Num of repeats: 3 Spacers: s83-s84 CRISPR array Location: 1103596-1103756 bp Num of repeats: 3 Spacers: s83-s84 CRISPR array Location: 1194247-1194804 bp Num of repeats: 9 Spacers: s85-s92 CRISPR array Location: 1194247-1194804 bp Num of repeats: 9 Spacers: s85-s92 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 46079-46373 bp]: array | spacers
           [Locus range 292945-294027 bp]: array | spacers
           [Locus range 590486-591896 bp]: array | spacers
           [Locus range 637566-637792 bp]: array | spacers
           [Locus range 953459-955197 bp]: array | spacers
           [Locus range 1102172-1102993 bp]: array | spacers
           [Locus range 1103596-1103756 bp]: array | spacers
           [Locus range 1194247-1194804 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQM01000021.1 Clostridioides difficile strain VRECD0192 genome assembly, contig: ERS717080SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 14473 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5076-5696 bp Zoom in on locus 1 x10 CRISPR array Location: 5076-5696 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 5076-5696 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5076-5696 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQM01000003.1 Clostridioides difficile strain VRECD0192 genome assembly, contig: ERS717080SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 397903 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 255601-266677 bp Zoom in on locus 1 x24 CRISPR array Location: 255601-257139 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 255601-257139 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 257323-257589 bp Gene: cd09722:cas1 Type: universal Location: 257592-258572 bp Gene: pfam01930:cas4 Type: Type-I Location: 258575-259093 bp Gene: COG1203:cas3 Type: Type-I Location: 259141-261462 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 261473-262174 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262176-263090 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263092-264942 bp Gene: pfam01881:cas6 Type: other Location: 264948-265742 bp Gene: pfam13280:WYL Type: other Location: 265763-266677 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 255601-257139 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUQM01000010.1 Clostridioides difficile strain VRECD0192 genome assembly, contig: ERS717080SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 146644 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 116797-124079 bp Zoom in on locus 1 x17 CRISPR array Location: 116797-117876 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 116797-117876 bp Num of repeats: 17 Spacers: s1-s16 Gene: COG1203:cas3 Type: Type-I Location: 118443-120425 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120436-121506 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 121527-122675 bp Gene: pfam01881:cas6 Type: other Location: 122677-123441 bp Gene: cd09693:cas5 Type: Type-I Location: 123432-124079 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 116797-117876 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUQM01000002.1 Clostridioides difficile strain VRECD0192 genome assembly, contig: ERS717080SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 479565 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91693-92048 bp Zoom in on locus 1 x6 CRISPR array Location: 91693-92048 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 91693-92048 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91693-92048 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)