CRISPRone

CRISPRone report for GCA_900165455.1_16852_2_7

♦ Seq 1: FUQP01000006.1 Clostridioides difficile strain VRECD0019 genome assembly, contig: ERS716900SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 246460 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 241815-242307 bp Zoom in on locus 1 x8 CRISPR array Location: 241815-242307 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 241815-242307 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 241815-242307 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQP01000008.1 Clostridioides difficile strain VRECD0019 genome assembly, contig: ERS716900SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 214019 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 121155-122377 bp Zoom in on locus 1 x19 CRISPR array Location: 121155-122377 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 121155-122377 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 121155-122377 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQP01000001.1 Clostridioides difficile strain VRECD0019 genome assembly, contig: ERS716900SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1145287 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18217-18842 bp 2 Locus 2: 193282-194625 bp 3 Locus 3: 538493-538587 bp 4 Locus 4: 902775-903526 bp 5 Locus 5: 1065936-1074254 bp Zoom in on locus 1 x10 Zoom in on locus 2 x21 Zoom in on locus 3 x2 Zoom in on locus 4 x12 Zoom in on locus 5 CRISPR array Location: 18217-18842 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 18217-18842 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 193282-194625 bp Num of repeats: 21 Spacers: s10-s29 CRISPR array Location: 193282-194625 bp Num of repeats: 21 Spacers: s10-s29 CRISPR array Location: 538493-538587 bp Num of repeats: 2 Spacers: s30-s30 CRISPR array Location: 538493-538587 bp Num of repeats: 2 Spacers: s30-s30 CRISPR array Location: 902775-903526 bp Num of repeats: 12 Spacers: s31-s41 CRISPR array Location: 902775-903526 bp Num of repeats: 12 Spacers: s31-s41 Gene: cd09641:cas3HD Type: Type-I Location: 1065936-1068344 bp Gene: cd09693:cas5 Type: Type-I Location: 1068371-1069168 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1069184-1070197 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1070217-1071692 bp Gene: pfam01881:cas6 Type: other Location: 1071697-1072434 bp Gene: unk Type: unknown Location: 1072535-1072711 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1073145-1074254 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 18217-18842 bp]: array | spacers
           [Locus range 193282-194625 bp]: array | spacers
           [Locus range 538493-538587 bp]: array | spacers
           [Locus range 902775-903526 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUQP01000003.1 Clostridioides difficile strain VRECD0019 genome assembly, contig: ERS716900SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 350783 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 84716-96196 bp Zoom in on locus 1 x30 Gene: pfam13280:WYL Type: other Location: 84716-85630 bp Gene: pfam01881:cas6 Type: other Location: 85708-86445 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 86451-88301 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 88303-89217 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 89219-89920 bp Gene: COG1203:cas3 Type: Type-I Location: 89931-92252 bp Gene: pfam01930:cas4 Type: Type-I Location: 92267-92818 bp Gene: cd09722:cas1 Type: universal Location: 92821-93801 bp Gene: cd09725:cas2 Type: universal Location: 93804-94070 bp CRISPR array Location: 94254-96196 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 94254-96196 bp Num of repeats: 30 Spacers: s1-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 94254-96196 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUQP01000002.1 Clostridioides difficile strain VRECD0019 genome assembly, contig: ERS716900SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 409562 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 209893-209986 bp Zoom in on locus 1 x2 CRISPR array Location: 209893-209986 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 209893-209986 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 209893-209986 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)