CRISPRone

CRISPRone report for GCA_900165465.1_16852_2_8

♦ Seq 1: FUQR01000004.1 Clostridioides difficile strain VRECD0021 genome assembly, contig: ERS716901SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 519644 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 499193-499286 bp Zoom in on locus 1 x2 CRISPR array Location: 499193-499286 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 499193-499286 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 499193-499286 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQR01000003.1 Clostridioides difficile strain VRECD0021 genome assembly, contig: ERS716901SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 613070 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 380042-380464 bp 2 Locus 2: 496813-497637 bp 3 Locus 3: 595544-597519 bp Zoom in on locus 1 x7 Zoom in on locus 2 x13 Zoom in on locus 3 x9 x13 CRISPR array Location: 380042-380464 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 380042-380464 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 496813-497637 bp Num of repeats: 13 Spacers: s7-s18 CRISPR array Location: 496813-497637 bp Num of repeats: 13 Spacers: s7-s18 CRISPR array Location: 595544-596099 bp Num of repeats: 9 Spacers: s19-s26 CRISPR array Location: 595544-596099 bp Num of repeats: 9 Spacers: s19-s26 CRISPR array Location: 596701-597519 bp Num of repeats: 13 Spacers: s27-s38 CRISPR array Location: 596701-597519 bp Num of repeats: 13 Spacers: s27-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 380042-380464 bp]: array | spacers
           [Locus range 496813-497637 bp]: array | spacers
           [Locus range 595544-596099 bp]: array | spacers
           [Locus range 596701-597519 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQR01000011.1 Clostridioides difficile strain VRECD0021 genome assembly, contig: ERS716901SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 14250 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5066-5426 bp Zoom in on locus 1 x6 CRISPR array Location: 5066-5426 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5066-5426 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5066-5426 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUQR01000001.1 Clostridioides difficile strain VRECD0021 genome assembly, contig: ERS716901SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1278139 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 116127-117802 bp 2 Locus 2: 447489-447714 bp 3 Locus 3: 789051-789277 bp 4 Locus 4: 955034-962899 bp 5 Locus 5: 1037120-1037676 bp Zoom in on locus 1 x26 Zoom in on locus 2 x4 Zoom in on locus 3 x4 Zoom in on locus 4 Zoom in on locus 5 x9 CRISPR array Location: 116127-117802 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 116127-117802 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 447489-447714 bp Num of repeats: 4 Spacers: s26-s28 CRISPR array Location: 447489-447714 bp Num of repeats: 4 Spacers: s26-s28 CRISPR array Location: 789051-789277 bp Num of repeats: 4 Spacers: s29-s31 CRISPR array Location: 789051-789277 bp Num of repeats: 4 Spacers: s29-s31 Gene: cd09641:cas3HD Type: Type-I Location: 955034-957442 bp Gene: cd09693:cas5 Type: Type-I Location: 957469-958266 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 958282-959295 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 959315-960790 bp Gene: pfam01881:cas6 Type: other Location: 960795-961532 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 961790-962899 bp CRISPR array Location: 1037120-1037676 bp Num of repeats: 9 Spacers: s32-s39 CRISPR array Location: 1037120-1037676 bp Num of repeats: 9 Spacers: s32-s39 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 116127-117802 bp]: array | spacers
           [Locus range 447489-447714 bp]: array | spacers
           [Locus range 789051-789277 bp]: array | spacers
           [Locus range 1037120-1037676 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)