CRISPRone

CRISPRone report for GCA_900165475.1_16852_2_9

♦ Seq 1: FUQQ01000014.1 Clostridioides difficile strain VRECD0020 genome assembly, contig: ERS716902SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 68678 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63669-64818 bp Zoom in on locus 1 x18 CRISPR array Location: 63669-64818 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63669-64818 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63669-64818 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQQ01000018.1 Clostridioides difficile strain VRECD0020 genome assembly, contig: ERS716902SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 14659 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8800-9948 bp Zoom in on locus 1 x18 CRISPR array Location: 8800-9948 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 8800-9948 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8800-9948 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQQ01000009.1 Clostridioides difficile strain VRECD0020 genome assembly, contig: ERS716902SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 133349 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11596-16526 bp 2 Locus 2: 114550-115167 bp Zoom in on locus 1 x14 x4 x7 Zoom in on locus 2 x10 CRISPR array Location: 11596-12481 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 11596-12481 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 14275-14498 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 14275-14498 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 16103-16526 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 16103-16526 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 114550-115167 bp Num of repeats: 10 Spacers: s23-s31 CRISPR array Location: 114550-115167 bp Num of repeats: 10 Spacers: s23-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11596-12481 bp]: array | spacers
           [Locus range 14275-14498 bp]: array | spacers
           [Locus range 16103-16526 bp]: array | spacers
           [Locus range 114550-115167 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUQQ01000001.1 Clostridioides difficile strain VRECD0020 genome assembly, contig: ERS716902SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1544002 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 246456-247014 bp 2 Locus 2: 320296-328617 bp 3 Locus 3: 491889-492506 bp 4 Locus 4: 923723-923884 bp 5 Locus 5: 1155162-1155720 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x10 Zoom in on locus 4 x3 Zoom in on locus 5 x9 CRISPR array Location: 246456-247014 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 246456-247014 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 320296-321405 bp Gene: unk Type: unknown Location: 321839-322015 bp Gene: pfam01881:cas6 Type: other Location: 322116-322853 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 322858-324333 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 324353-325369 bp Gene: cd09693:cas5 Type: Type-I Location: 325385-326182 bp Gene: cd09641:cas3HD Type: Type-I Location: 326209-328617 bp CRISPR array Location: 491889-492506 bp Num of repeats: 10 Spacers: s9-s17 CRISPR array Location: 491889-492506 bp Num of repeats: 10 Spacers: s9-s17 CRISPR array Location: 923723-923884 bp Num of repeats: 3 Spacers: s18-s19 CRISPR array Location: 923723-923884 bp Num of repeats: 3 Spacers: s18-s19 CRISPR array Location: 1155162-1155720 bp Num of repeats: 9 Spacers: s20-s27 CRISPR array Location: 1155162-1155720 bp Num of repeats: 9 Spacers: s20-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 246456-247014 bp]: array | spacers
           [Locus range 491889-492506 bp]: array | spacers
           [Locus range 923723-923884 bp]: array | spacers
           [Locus range 1155162-1155720 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUQQ01000003.1 Clostridioides difficile strain VRECD0020 genome assembly, contig: ERS716902SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 498190 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252729-263866 bp 2 Locus 2: 477121-477214 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 252729-254328 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 252729-254328 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 254512-254778 bp Gene: cd09722:cas1 Type: universal Location: 254781-255761 bp Gene: pfam01930:cas4 Type: Type-I Location: 255764-256282 bp Gene: COG1203:cas3 Type: Type-I Location: 256330-258651 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258662-259363 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259365-260279 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260281-262131 bp Gene: pfam01881:cas6 Type: other Location: 262137-262931 bp Gene: pfam13280:WYL Type: other Location: 262952-263866 bp CRISPR array Location: 477121-477214 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 477121-477214 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252729-254328 bp]: array | spacers
           [Locus range 477121-477214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)