CRISPRone

CRISPRone report for GCA_900165485.1_16852_2_12

♦ Seq 1: FUQT01000021.1 Clostridioides difficile strain VRECD0023 genome assembly, contig: ERS716905SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 26842 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9301-11816 bp Zoom in on locus 1 x6 x8 CRISPR array Location: 9301-9659 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 9301-9659 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 11326-11816 bp Num of repeats: 8 Spacers: s6-s12 CRISPR array Location: 11326-11816 bp Num of repeats: 8 Spacers: s6-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9301-9659 bp]: array | spacers
           [Locus range 11326-11816 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQT01000004.1 Clostridioides difficile strain VRECD0023 genome assembly, contig: ERS716905SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 252446 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 148950-149044 bp Zoom in on locus 1 x2 CRISPR array Location: 148950-149044 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 148950-149044 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 148950-149044 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQT01000003.1 Clostridioides difficile strain VRECD0023 genome assembly, contig: ERS716905SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 301073 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 238629-246372 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 238629-241154 bp Gene: unk Type: unknown Location: 241225-241398 bp Gene: unk Type: unknown Location: 241585-241992 bp Gene: cd09693:cas5 Type: Type-I Location: 242042-242794 bp Gene: pfam05107:cas7b Type: Type-I Location: 242797-243774 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 243933-245612 bp Gene: cd09652:cas6 Type: other Location: 245686-246372 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUQT01000001.1 Clostridioides difficile strain VRECD0023 genome assembly, contig: ERS716905SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1358273 bp; # of CRISPR array = 5; # of cas gene = 8  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112936-113361 bp 2 Locus 2: 131122-134544 bp 3 Locus 3: 196197-197213 bp 4 Locus 4: 523646-523871 bp 5 Locus 5: 871961-872647 bp 6 Locus 6: 1034619-1042937 bp 7 Locus 7: 1116219-1116313 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x16 Zoom in on locus 4 x4 Zoom in on locus 5 x11 Zoom in on locus 6 Zoom in on locus 7 x2 CRISPR array Location: 112936-113361 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 112936-113361 bp Num of repeats: 7 Spacers: s1-s6 Gene: cas14:cas14 Type: Type-V Location: 131122-132240 bp Gene: unk Type: unknown Location: 132456-134000 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 134176-134544 bp CRISPR array Location: 196197-197213 bp Num of repeats: 16 Spacers: s7-s21 CRISPR array Location: 196197-197213 bp Num of repeats: 16 Spacers: s7-s21 CRISPR array Location: 523646-523871 bp Num of repeats: 4 Spacers: s22-s24 CRISPR array Location: 523646-523871 bp Num of repeats: 4 Spacers: s22-s24 CRISPR array Location: 871961-872647 bp Num of repeats: 11 Spacers: s25-s34 CRISPR array Location: 871961-872647 bp Num of repeats: 11 Spacers: s25-s34 Gene: cd09641:cas3HD Type: Type-I Location: 1034619-1037027 bp Gene: cd09693:cas5 Type: Type-I Location: 1037054-1037851 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1037867-1038880 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1038900-1040375 bp Gene: pfam01881:cas6 Type: other Location: 1040380-1041117 bp Gene: unk Type: unknown Location: 1041218-1041394 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1041828-1042937 bp CRISPR array Location: 1116219-1116313 bp Num of repeats: 2 Spacers: s35-s35 CRISPR array Location: 1116219-1116313 bp Num of repeats: 2 Spacers: s35-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 112936-113361 bp]: array | spacers
           [Locus range 196197-197213 bp]: array | spacers
           [Locus range 523646-523871 bp]: array | spacers
           [Locus range 871961-872647 bp]: array | spacers
           [Locus range 1116219-1116313 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUQT01000002.1 Clostridioides difficile strain VRECD0023 genome assembly, contig: ERS716905SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 866679 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 332976-333333 bp Zoom in on locus 1 x6 CRISPR array Location: 332976-333333 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 332976-333333 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 332976-333333 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUQT01000006.1 Clostridioides difficile strain VRECD0023 genome assembly, contig: ERS716905SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 205732 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31379-41827 bp Zoom in on locus 1 x14 CRISPR array Location: 31379-32262 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 31379-32262 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09725:cas2 Type: universal Location: 32446-32712 bp Gene: cd09722:cas1 Type: universal Location: 32715-33695 bp Gene: pfam01930:cas4 Type: Type-I Location: 33698-34216 bp Gene: cd09641:cas3HD Type: Type-I Location: 34264-36585 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 36596-37297 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 37299-38213 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 38215-40092 bp Gene: pfam01881:cas6 Type: other Location: 40098-40892 bp Gene: pfam13280:WYL Type: other Location: 40913-41827 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31379-32262 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)