CRISPRone

CRISPRone report for GCA_900165495.1_16852_2_15

♦ Seq 1: FUQU01000004.1 Clostridioides difficile strain VRECD0026 genome assembly, contig: ERS716908SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 414057 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 150767-161711 bp Zoom in on locus 1 x22 Gene: pfam13280:WYL Type: other Location: 150767-151654 bp Gene: pfam01881:cas6 Type: other Location: 151732-152469 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 152475-154352 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 154354-155268 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 155270-155971 bp Gene: COG1203:cas3 Type: Type-I Location: 155982-158303 bp Gene: pfam01930:cas4 Type: Type-I Location: 158318-158869 bp Gene: cd09722:cas1 Type: universal Location: 158872-159852 bp Gene: cd09725:cas2 Type: universal Location: 159855-160121 bp CRISPR array Location: 160305-161711 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 160305-161711 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 160305-161711 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQU01000005.1 Clostridioides difficile strain VRECD0026 genome assembly, contig: ERS716908SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 275885 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 210458-210552 bp Zoom in on locus 1 x2 CRISPR array Location: 210458-210552 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 210458-210552 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 210458-210552 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQU01000003.1 Clostridioides difficile strain VRECD0026 genome assembly, contig: ERS716908SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 599187 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 83689-86993 bp Zoom in on locus 1 x3 x5 x6 CRISPR array Location: 83689-83849 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 83689-83849 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 83994-84286 bp Num of repeats: 5 Spacers: s3-s6 CRISPR array Location: 83994-84286 bp Num of repeats: 5 Spacers: s3-s6 CRISPR array Location: 86634-86993 bp Num of repeats: 6 Spacers: s7-s11 CRISPR array Location: 86634-86993 bp Num of repeats: 6 Spacers: s7-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 83689-83849 bp]: array | spacers
           [Locus range 83994-84286 bp]: array | spacers
           [Locus range 86634-86993 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUQU01000018.1 Clostridioides difficile strain VRECD0026 genome assembly, contig: ERS716908SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 15350 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8832-10041 bp Zoom in on locus 1 x19 CRISPR array Location: 8832-10041 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 8832-10041 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8832-10041 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUQU01000002.1 Clostridioides difficile strain VRECD0026 genome assembly, contig: ERS716908SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 671986 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 137001-137621 bp 2 Locus 2: 247948-248772 bp Zoom in on locus 1 x10 Zoom in on locus 2 x13 CRISPR array Location: 137001-137621 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 137001-137621 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 247948-248772 bp Num of repeats: 13 Spacers: s10-s21 CRISPR array Location: 247948-248772 bp Num of repeats: 13 Spacers: s10-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 137001-137621 bp]: array | spacers
           [Locus range 247948-248772 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUQU01000001.1 Clostridioides difficile strain VRECD0026 genome assembly, contig: ERS716908SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1168783 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 227606-227966 bp 2 Locus 2: 301248-309594 bp 3 Locus 3: 471575-472194 bp 4 Locus 4: 832466-832691 bp 5 Locus 5: 1149889-1151165 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 Zoom in on locus 4 x4 Zoom in on locus 5 x20 CRISPR array Location: 227606-227966 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 227606-227966 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 301248-302357 bp Gene: unk Type: unknown Location: 302816-302992 bp Gene: pfam01881:cas6 Type: other Location: 303093-303830 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 303835-305310 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 305330-306346 bp Gene: cd09693:cas5 Type: Type-I Location: 306362-307159 bp Gene: cd09641:cas3HD Type: Type-I Location: 307186-309594 bp CRISPR array Location: 471575-472194 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 471575-472194 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 832466-832691 bp Num of repeats: 4 Spacers: s15-s17 CRISPR array Location: 832466-832691 bp Num of repeats: 4 Spacers: s15-s17 CRISPR array Location: 1149889-1151165 bp Num of repeats: 20 Spacers: s18-s36 CRISPR array Location: 1149889-1151165 bp Num of repeats: 20 Spacers: s18-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 227606-227966 bp]: array | spacers
           [Locus range 471575-472194 bp]: array | spacers
           [Locus range 832466-832691 bp]: array | spacers
           [Locus range 1149889-1151165 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)