CRISPRone

CRISPRone report for GCA_900165505.1_16852_2_20

♦ Seq 1: FUQV01000002.1 Clostridioides difficile strain VRECD0024 genome assembly, contig: ERS716913SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 745657 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133895-138825 bp 2 Locus 2: 229672-230428 bp 3 Locus 3: 340750-341308 bp 4 Locus 4: 556995-558143 bp Zoom in on locus 1 x14 x4 x7 Zoom in on locus 2 x12 Zoom in on locus 3 x9 Zoom in on locus 4 x18 CRISPR array Location: 133895-134780 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 133895-134780 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 136574-136797 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 136574-136797 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 138402-138825 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 138402-138825 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 229672-230428 bp Num of repeats: 12 Spacers: s23-s33 CRISPR array Location: 229672-230428 bp Num of repeats: 12 Spacers: s23-s33 CRISPR array Location: 340750-341308 bp Num of repeats: 9 Spacers: s34-s41 CRISPR array Location: 340750-341308 bp Num of repeats: 9 Spacers: s34-s41 CRISPR array Location: 556995-558143 bp Num of repeats: 18 Spacers: s42-s58 CRISPR array Location: 556995-558143 bp Num of repeats: 18 Spacers: s42-s58 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 133895-134780 bp]: array | spacers
           [Locus range 136574-136797 bp]: array | spacers
           [Locus range 138402-138825 bp]: array | spacers
           [Locus range 229672-230428 bp]: array | spacers
           [Locus range 340750-341308 bp]: array | spacers
           [Locus range 556995-558143 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQV01000001.1 Clostridioides difficile strain VRECD0024 genome assembly, contig: ERS716913SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1012224 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244814-245172 bp 2 Locus 2: 318454-326775 bp 3 Locus 3: 490047-490664 bp 4 Locus 4: 871935-872096 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 Zoom in on locus 4 x3 CRISPR array Location: 244814-245172 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 244814-245172 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318454-319563 bp Gene: unk Type: unknown Location: 319997-320173 bp Gene: pfam01881:cas6 Type: other Location: 320274-321011 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 321016-322491 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322511-323527 bp Gene: cd09693:cas5 Type: Type-I Location: 323543-324340 bp Gene: cd09641:cas3HD Type: Type-I Location: 324367-326775 bp CRISPR array Location: 490047-490664 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 490047-490664 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 871935-872096 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 871935-872096 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244814-245172 bp]: array | spacers
           [Locus range 490047-490664 bp]: array | spacers
           [Locus range 871935-872096 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQV01000003.1 Clostridioides difficile strain VRECD0024 genome assembly, contig: ERS716913SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 599831 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252746-263883 bp 2 Locus 2: 486096-486189 bp 3 Locus 3: 535101-536186 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 Zoom in on locus 3 x17 CRISPR array Location: 252746-254345 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 252746-254345 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 254529-254795 bp Gene: cd09722:cas1 Type: universal Location: 254798-255778 bp Gene: pfam01930:cas4 Type: Type-I Location: 255781-256299 bp Gene: COG1203:cas3 Type: Type-I Location: 256347-258668 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258679-259380 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259382-260296 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260298-262148 bp Gene: pfam01881:cas6 Type: other Location: 262154-262948 bp Gene: pfam13280:WYL Type: other Location: 262969-263883 bp CRISPR array Location: 486096-486189 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 486096-486189 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 535101-536186 bp Num of repeats: 17 Spacers: s26-s41 CRISPR array Location: 535101-536186 bp Num of repeats: 17 Spacers: s26-s41 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252746-254345 bp]: array | spacers
           [Locus range 486096-486189 bp]: array | spacers
           [Locus range 535101-536186 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)