CRISPRone

CRISPRone report for GCA_900165515.1_16852_2_18

♦ Seq 1: FUQW01000001.1 Clostridioides difficile strain VRECD0017 genome assembly, contig: ERS716911SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1147371 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244874-245232 bp 2 Locus 2: 318644-327100 bp 3 Locus 3: 490372-490989 bp 4 Locus 4: 872246-872407 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 Zoom in on locus 4 x3 CRISPR array Location: 244874-245232 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 244874-245232 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318644-319753 bp Gene: unk Type: unknown Location: 320322-320498 bp Gene: pfam01881:cas6 Type: other Location: 320599-321336 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 321341-322816 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322836-323852 bp Gene: cd09693:cas5 Type: Type-I Location: 323868-324665 bp Gene: cd09641:cas3HD Type: Type-I Location: 324692-327100 bp CRISPR array Location: 490372-490989 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 490372-490989 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 872246-872407 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 872246-872407 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244874-245232 bp]: array | spacers
           [Locus range 490372-490989 bp]: array | spacers
           [Locus range 872246-872407 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQW01000012.1 Clostridioides difficile strain VRECD0017 genome assembly, contig: ERS716911SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 14542 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8707-9855 bp Zoom in on locus 1 x18 CRISPR array Location: 8707-9855 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 8707-9855 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8707-9855 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQW01000003.1 Clostridioides difficile strain VRECD0017 genome assembly, contig: ERS716911SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 535845 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64054-65139 bp 2 Locus 2: 254477-255036 bp 3 Locus 3: 365357-366114 bp 4 Locus 4: 456842-461773 bp Zoom in on locus 1 x17 Zoom in on locus 2 x9 Zoom in on locus 3 x12 Zoom in on locus 4 x7 x4 x14 CRISPR array Location: 64054-65139 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 64054-65139 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 254477-255036 bp Num of repeats: 9 Spacers: s17-s24 CRISPR array Location: 254477-255036 bp Num of repeats: 9 Spacers: s17-s24 CRISPR array Location: 365357-366114 bp Num of repeats: 12 Spacers: s25-s35 CRISPR array Location: 365357-366114 bp Num of repeats: 12 Spacers: s25-s35 CRISPR array Location: 456842-457266 bp Num of repeats: 7 Spacers: s36-s41 CRISPR array Location: 456842-457266 bp Num of repeats: 7 Spacers: s36-s41 CRISPR array Location: 458870-459094 bp Num of repeats: 4 Spacers: s42-s44 CRISPR array Location: 458870-459094 bp Num of repeats: 4 Spacers: s42-s44 CRISPR array Location: 460887-461773 bp Num of repeats: 14 Spacers: s45-s57 CRISPR array Location: 460887-461773 bp Num of repeats: 14 Spacers: s45-s57 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 64054-65139 bp]: array | spacers
           [Locus range 254477-255036 bp]: array | spacers
           [Locus range 365357-366114 bp]: array | spacers
           [Locus range 456842-457266 bp]: array | spacers
           [Locus range 458870-459094 bp]: array | spacers
           [Locus range 460887-461773 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUQW01000004.1 Clostridioides difficile strain VRECD0017 genome assembly, contig: ERS716911SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 531144 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44864-44958 bp 2 Locus 2: 267224-278335 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 44864-44958 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44864-44958 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267224-268111 bp Gene: pfam01881:cas6 Type: other Location: 268189-268926 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268932-270782 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270784-271698 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271700-272401 bp Gene: COG1203:cas3 Type: Type-I Location: 272412-274733 bp Gene: pfam01930:cas4 Type: Type-I Location: 274748-275299 bp Gene: cd09722:cas1 Type: universal Location: 275302-276282 bp Gene: cd09725:cas2 Type: universal Location: 276285-276551 bp CRISPR array Location: 276735-278335 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 276735-278335 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44864-44958 bp]: array | spacers
           [Locus range 276735-278335 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)