CRISPRone

CRISPRone report for GCA_900165525.1_16852_2_21

♦ Seq 1: FUQX01000003.1 Clostridioides difficile strain VRECD0034 genome assembly, contig: ERS716914SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 402072 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13939-14097 bp Zoom in on locus 1 x3 CRISPR array Location: 13939-14097 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 13939-14097 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13939-14097 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQX01000001.1 Clostridioides difficile strain VRECD0034 genome assembly, contig: ERS716914SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1204092 bp; # of CRISPR array = 2; # of cas gene = 11  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 188204-188693 bp 2 Locus 2: 265989-274326 bp 3 Locus 3: 325529-336525 bp 4 Locus 4: 1094245-1095788 bp 5 Locus 5: 1148727-1152940 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 Zoom in on locus 4 x24 Zoom in on locus 5 CRISPR array Location: 188204-188693 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 188204-188693 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 265989-267098 bp Gene: unk Type: unknown Location: 267552-267728 bp Gene: pfam01881:cas6 Type: other Location: 267829-268566 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 268571-270037 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270056-271069 bp Gene: cd09693:cas5 Type: Type-I Location: 271085-271891 bp Gene: cd09641:cas3HD Type: Type-I Location: 271918-274326 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 325529-326014 bp Gene: cd06127:DEDDh Type: Type-I Location: 332856-333902 bp Gene: unk Type: unknown Location: 334273-334779 bp Gene: unk Type: unknown Location: 335192-335860 bp Gene: cd06127:DEDDh Type: Type-I Location: 336019-336525 bp CRISPR array Location: 1094245-1095788 bp Num of repeats: 24 Spacers: s8-s30 CRISPR array Location: 1094245-1095788 bp Num of repeats: 24 Spacers: s8-s30 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1148727-1149095 bp Gene: unk Type: unknown Location: 1149270-1150793 bp Gene: unk Type: unknown Location: 1150921-1151079 bp Gene: cas14:cas14 Type: Type-V Location: 1151822-1152940 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 188204-188693 bp]: array | spacers
           [Locus range 1094245-1095788 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQX01000005.1 Clostridioides difficile strain VRECD0034 genome assembly, contig: ERS716914SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 248650 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94689-94982 bp 2 Locus 2: 193666-197147 bp Zoom in on locus 1 x5 Zoom in on locus 2 x8 x11 CRISPR array Location: 94689-94982 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 94689-94982 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 193666-194154 bp Num of repeats: 8 Spacers: s5-s11 CRISPR array Location: 193666-194154 bp Num of repeats: 8 Spacers: s5-s11 CRISPR array Location: 196457-197147 bp Num of repeats: 11 Spacers: s12-s21 CRISPR array Location: 196457-197147 bp Num of repeats: 11 Spacers: s12-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 94689-94982 bp]: array | spacers
           [Locus range 193666-194154 bp]: array | spacers
           [Locus range 196457-197147 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)