CRISPRone

CRISPRone report for GCA_900165535.1_16852_2_22

♦ Seq 1: FUQY01000001.1 Clostridioides difficile strain VRECD0028 genome assembly, contig: ERS716915SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1151934 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 270781-271277 bp 2 Locus 2: 344559-352905 bp 3 Locus 3: 516325-517073 bp 4 Locus 4: 889874-890165 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x5 CRISPR array Location: 270781-271277 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 270781-271277 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 344559-345668 bp Gene: unk Type: unknown Location: 346127-346303 bp Gene: pfam01881:cas6 Type: other Location: 346404-347141 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 347146-348621 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 348641-349657 bp Gene: cd09693:cas5 Type: Type-I Location: 349673-350470 bp Gene: cd09641:cas3HD Type: Type-I Location: 350497-352905 bp CRISPR array Location: 516325-517073 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 516325-517073 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 889874-890165 bp Num of repeats: 5 Spacers: s19-s22 CRISPR array Location: 889874-890165 bp Num of repeats: 5 Spacers: s19-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 270781-271277 bp]: array | spacers
           [Locus range 516325-517073 bp]: array | spacers
           [Locus range 889874-890165 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQY01000011.1 Clostridioides difficile strain VRECD0028 genome assembly, contig: ERS716915SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 102604 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16008-18619 bp Zoom in on locus 1 x11 x4 CRISPR array Location: 16008-16693 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 16008-16693 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 18398-18619 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 18398-18619 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16008-16693 bp]: array | spacers
           [Locus range 18398-18619 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQY01000002.1 Clostridioides difficile strain VRECD0028 genome assembly, contig: ERS716915SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 727355 bp; # of CRISPR array = 4; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 330052-330876 bp 2 Locus 2: 379293-388143 bp 3 Locus 3: 444538-446347 bp 4 Locus 4: 526958-527248 bp 5 Locus 5: 662400-663735 bp Zoom in on locus 1 x13 Zoom in on locus 2 Zoom in on locus 3 x28 Zoom in on locus 4 x5 Zoom in on locus 5 x21 CRISPR array Location: 330052-330876 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 330052-330876 bp Num of repeats: 13 Spacers: s1-s12 Gene: mkCas0115:csx3 Type: other Location: 379293-379970 bp Gene: unk Type: unknown Location: 379971-382532 bp Gene: cls001593:casR Type: Type-I Location: 382753-384027 bp Gene: unk Type: unknown Location: 384188-386206 bp Gene: pfam00078:RT Type: other Location: 386302-388143 bp CRISPR array Location: 444538-446347 bp Num of repeats: 28 Spacers: s13-s39 CRISPR array Location: 444538-446347 bp Num of repeats: 28 Spacers: s13-s39 CRISPR array Location: 526958-527248 bp Num of repeats: 5 Spacers: s40-s43 CRISPR array Location: 526958-527248 bp Num of repeats: 5 Spacers: s40-s43 CRISPR array Location: 662400-663735 bp Num of repeats: 21 Spacers: s44-s63 CRISPR array Location: 662400-663735 bp Num of repeats: 21 Spacers: s44-s63 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 330052-330876 bp]: array | spacers
           [Locus range 444538-446347 bp]: array | spacers
           [Locus range 526958-527248 bp]: array | spacers
           [Locus range 662400-663735 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUQY01000003.1 Clostridioides difficile strain VRECD0028 genome assembly, contig: ERS716915SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 634010 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 432915-442837 bp Zoom in on locus 1 x6 CRISPR array Location: 432915-433272 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 432915-433272 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09725:cas2 Type: universal Location: 433456-433722 bp Gene: cd09722:cas1 Type: universal Location: 433725-434705 bp Gene: pfam01930:cas4 Type: Type-I Location: 434708-435226 bp Gene: cd09641:cas3HD Type: Type-I Location: 435274-437595 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 437606-438307 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 438309-439223 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 439225-441102 bp Gene: pfam01881:cas6 Type: other Location: 441108-441902 bp Gene: pfam13280:WYL Type: other Location: 441923-442837 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 432915-433272 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)