CRISPRone

CRISPRone report for GCA_900165545.1_16852_2_24

♦ Seq 1: FUQZ01000007.1 Clostridioides difficile strain VRECD0032 genome assembly, contig: ERS716917SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 210577 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94683-94976 bp 2 Locus 2: 193660-197141 bp Zoom in on locus 1 x5 Zoom in on locus 2 x8 x11 CRISPR array Location: 94683-94976 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 94683-94976 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 193660-194148 bp Num of repeats: 8 Spacers: s5-s11 CRISPR array Location: 193660-194148 bp Num of repeats: 8 Spacers: s5-s11 CRISPR array Location: 196451-197141 bp Num of repeats: 11 Spacers: s12-s21 CRISPR array Location: 196451-197141 bp Num of repeats: 11 Spacers: s12-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 94683-94976 bp]: array | spacers
           [Locus range 193660-194148 bp]: array | spacers
           [Locus range 196451-197141 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUQZ01000001.1 Clostridioides difficile strain VRECD0032 genome assembly, contig: ERS716917SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1167794 bp; # of CRISPR array = 2; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 188204-188693 bp 2 Locus 2: 265989-274326 bp 3 Locus 3: 325529-336525 bp 4 Locus 4: 1045117-1046660 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 Zoom in on locus 4 x24 CRISPR array Location: 188204-188693 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 188204-188693 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 265989-267098 bp Gene: unk Type: unknown Location: 267552-267728 bp Gene: pfam01881:cas6 Type: other Location: 267829-268566 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 268571-270037 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270056-271069 bp Gene: cd09693:cas5 Type: Type-I Location: 271085-271891 bp Gene: cd09641:cas3HD Type: Type-I Location: 271918-274326 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 325529-326014 bp Gene: cd06127:DEDDh Type: Type-I Location: 332856-333902 bp Gene: unk Type: unknown Location: 334273-334779 bp Gene: unk Type: unknown Location: 335192-335860 bp Gene: cd06127:DEDDh Type: Type-I Location: 336019-336525 bp CRISPR array Location: 1045117-1046660 bp Num of repeats: 24 Spacers: s8-s30 CRISPR array Location: 1045117-1046660 bp Num of repeats: 24 Spacers: s8-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 188204-188693 bp]: array | spacers
           [Locus range 1045117-1046660 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUQZ01000003.1 Clostridioides difficile strain VRECD0032 genome assembly, contig: ERS716917SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 402070 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 387974-388133 bp Zoom in on locus 1 x3 CRISPR array Location: 387974-388133 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 387974-388133 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 387974-388133 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)