CRISPRone

CRISPRone report for GCA_900165555.1_16852_2_25

♦ Seq 1: FURA01000017.1 Clostridioides difficile strain VRECD0035 genome assembly, contig: ERS716918SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 14310 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7500-7927 bp Zoom in on locus 1 x7 CRISPR array Location: 7500-7927 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 7500-7927 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7500-7927 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURA01000001.1 Clostridioides difficile strain VRECD0035 genome assembly, contig: ERS716918SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1321129 bp; # of CRISPR array = 6; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89077-91051 bp 2 Locus 2: 160668-162408 bp 3 Locus 3: 490540-490765 bp 4 Locus 4: 832101-832327 bp 5 Locus 5: 998084-1005949 bp 6 Locus 6: 1080170-1080726 bp Zoom in on locus 1 x13 x9 Zoom in on locus 2 x27 Zoom in on locus 3 x4 Zoom in on locus 4 x4 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 89077-89894 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 89077-89894 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 90497-91051 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 90497-91051 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 160668-162408 bp Num of repeats: 27 Spacers: s21-s46 CRISPR array Location: 160668-162408 bp Num of repeats: 27 Spacers: s21-s46 CRISPR array Location: 490540-490765 bp Num of repeats: 4 Spacers: s47-s49 CRISPR array Location: 490540-490765 bp Num of repeats: 4 Spacers: s47-s49 CRISPR array Location: 832101-832327 bp Num of repeats: 4 Spacers: s50-s52 CRISPR array Location: 832101-832327 bp Num of repeats: 4 Spacers: s50-s52 Gene: cd09641:cas3HD Type: Type-I Location: 998084-1000492 bp Gene: cd09693:cas5 Type: Type-I Location: 1000519-1001316 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1001332-1002345 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1002365-1003840 bp Gene: pfam01881:cas6 Type: other Location: 1003845-1004582 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1004840-1005949 bp CRISPR array Location: 1080170-1080726 bp Num of repeats: 9 Spacers: s53-s60 CRISPR array Location: 1080170-1080726 bp Num of repeats: 9 Spacers: s53-s60 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 89077-89894 bp]: array | spacers
           [Locus range 90497-91051 bp]: array | spacers
           [Locus range 160668-162408 bp]: array | spacers
           [Locus range 490540-490765 bp]: array | spacers
           [Locus range 832101-832327 bp]: array | spacers
           [Locus range 1080170-1080726 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURA01000004.1 Clostridioides difficile strain VRECD0035 genome assembly, contig: ERS716918SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 519375 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20187-20281 bp Zoom in on locus 1 x2 CRISPR array Location: 20187-20281 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 20187-20281 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20187-20281 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FURA01000003.1 Clostridioides difficile strain VRECD0035 genome assembly, contig: ERS716918SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 556145 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80438-81196 bp 2 Locus 2: 197523-197944 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 CRISPR array Location: 80438-81196 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 80438-81196 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 197523-197944 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 197523-197944 bp Num of repeats: 7 Spacers: s12-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 80438-81196 bp]: array | spacers
           [Locus range 197523-197944 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)