CRISPRone

CRISPRone report for GCA_900165565.1_16852_2_26

♦ Seq 1: FURB01000001.1 Clostridioides difficile strain VRECD0027 genome assembly, contig: ERS716919SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 581865 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87084-87700 bp 2 Locus 2: 250972-259293 bp 3 Locus 3: 332576-332933 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 87084-87700 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 87084-87700 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 250972-253380 bp Gene: cd09693:cas5 Type: Type-I Location: 253407-254204 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 254220-255236 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 255256-256731 bp Gene: pfam01881:cas6 Type: other Location: 256736-257473 bp Gene: unk Type: unknown Location: 257574-257750 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 258184-259293 bp CRISPR array Location: 332576-332933 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 332576-332933 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 87084-87700 bp]: array | spacers
           [Locus range 332576-332933 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURB01000005.1 Clostridioides difficile strain VRECD0027 genome assembly, contig: ERS716919SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 380836 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 286984-287144 bp Zoom in on locus 1 x3 CRISPR array Location: 286984-287144 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 286984-287144 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 286984-287144 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURB01000003.1 Clostridioides difficile strain VRECD0027 genome assembly, contig: ERS716919SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 479054 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63891-65041 bp 2 Locus 2: 254380-254873 bp 3 Locus 3: 365194-365886 bp Zoom in on locus 1 x18 Zoom in on locus 2 x8 Zoom in on locus 3 x11 CRISPR array Location: 63891-65041 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63891-65041 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 254380-254873 bp Num of repeats: 8 Spacers: s18-s24 CRISPR array Location: 254380-254873 bp Num of repeats: 8 Spacers: s18-s24 CRISPR array Location: 365194-365886 bp Num of repeats: 11 Spacers: s25-s34 CRISPR array Location: 365194-365886 bp Num of repeats: 11 Spacers: s25-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63891-65041 bp]: array | spacers
           [Locus range 254380-254873 bp]: array | spacers
           [Locus range 365194-365886 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FURB01000006.1 Clostridioides difficile strain VRECD0027 genome assembly, contig: ERS716919SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 268157 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 237215-238299 bp Zoom in on locus 1 x17 CRISPR array Location: 237215-238299 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 237215-238299 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 237215-238299 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FURB01000002.1 Clostridioides difficile strain VRECD0027 genome assembly, contig: ERS716919SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 547064 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 292365-303502 bp 2 Locus 2: 525936-526029 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 292365-293964 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 292365-293964 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 294148-294414 bp Gene: cd09722:cas1 Type: universal Location: 294417-295397 bp Gene: pfam01930:cas4 Type: Type-I Location: 295400-295918 bp Gene: COG1203:cas3 Type: Type-I Location: 295966-298287 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 298298-298999 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 299001-299915 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 299917-301767 bp Gene: pfam01881:cas6 Type: other Location: 301773-302567 bp Gene: pfam13280:WYL Type: other Location: 302588-303502 bp CRISPR array Location: 525936-526029 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 525936-526029 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 292365-293964 bp]: array | spacers
           [Locus range 525936-526029 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)