CRISPRone

CRISPRone report for GCA_900165575.1_16852_2_28

♦ Seq 1: FURC01000002.1 Clostridioides difficile strain VRECD0018 genome assembly, contig: ERS716921SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 387125 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257598-269077 bp Zoom in on locus 1 x30 CRISPR array Location: 257598-259539 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 257598-259539 bp Num of repeats: 30 Spacers: s1-s29 Gene: cd09725:cas2 Type: universal Location: 259723-259989 bp Gene: cd09722:cas1 Type: universal Location: 259992-260972 bp Gene: pfam01930:cas4 Type: Type-I Location: 260975-261493 bp Gene: COG1203:cas3 Type: Type-I Location: 261541-263862 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 263873-264574 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 264576-265490 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 265492-267342 bp Gene: pfam01881:cas6 Type: other Location: 267348-268142 bp Gene: pfam13280:WYL Type: other Location: 268163-269077 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 257598-259539 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURC01000001.1 Clostridioides difficile strain VRECD0018 genome assembly, contig: ERS716921SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1391227 bp; # of CRISPR array = 5; # of cas gene = 8  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113228-113852 bp 2 Locus 2: 131586-134677 bp 3 Locus 3: 193194-194537 bp 4 Locus 4: 538405-538499 bp 5 Locus 5: 902525-903276 bp 6 Locus 6: 1065686-1074004 bp 7 Locus 7: 1149154-1149645 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x21 Zoom in on locus 4 x2 Zoom in on locus 5 x12 Zoom in on locus 6 Zoom in on locus 7 x8 CRISPR array Location: 113228-113852 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 113228-113852 bp Num of repeats: 10 Spacers: s1-s9 Gene: cas14:cas14 Type: Type-V Location: 131586-132512 bp Gene: unk Type: unknown Location: 132589-134133 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 134309-134677 bp CRISPR array Location: 193194-194537 bp Num of repeats: 21 Spacers: s10-s29 CRISPR array Location: 193194-194537 bp Num of repeats: 21 Spacers: s10-s29 CRISPR array Location: 538405-538499 bp Num of repeats: 2 Spacers: s30-s30 CRISPR array Location: 538405-538499 bp Num of repeats: 2 Spacers: s30-s30 CRISPR array Location: 902525-903276 bp Num of repeats: 12 Spacers: s31-s41 CRISPR array Location: 902525-903276 bp Num of repeats: 12 Spacers: s31-s41 Gene: cd09641:cas3HD Type: Type-I Location: 1065686-1068094 bp Gene: cd09693:cas5 Type: Type-I Location: 1068121-1068918 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1068934-1069947 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1069967-1071442 bp Gene: pfam01881:cas6 Type: other Location: 1071447-1072184 bp Gene: unk Type: unknown Location: 1072285-1072461 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1072895-1074004 bp CRISPR array Location: 1149154-1149645 bp Num of repeats: 8 Spacers: s42-s48 CRISPR array Location: 1149154-1149645 bp Num of repeats: 8 Spacers: s42-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113228-113852 bp]: array | spacers
           [Locus range 193194-194537 bp]: array | spacers
           [Locus range 538405-538499 bp]: array | spacers
           [Locus range 902525-903276 bp]: array | spacers
           [Locus range 1149154-1149645 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURC01000008.1 Clostridioides difficile strain VRECD0018 genome assembly, contig: ERS716921SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 197520 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 176305-176398 bp Zoom in on locus 1 x2 CRISPR array Location: 176305-176398 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 176305-176398 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 176305-176398 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FURC01000006.1 Clostridioides difficile strain VRECD0018 genome assembly, contig: ERS716921SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 214292 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91663-92884 bp Zoom in on locus 1 x19 CRISPR array Location: 91663-92884 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 91663-92884 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91663-92884 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)