CRISPRone

CRISPRone report for GCA_900165585.1_16852_2_29

♦ Seq 1: FURD01000001.1 Clostridioides difficile strain VRECD0025 genome assembly, contig: ERS716922SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1910438 bp; # of CRISPR array = 9; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28728-30702 bp 2 Locus 2: 120226-120984 bp 3 Locus 3: 229419-229840 bp 4 Locus 4: 433375-433801 bp 5 Locus 5: 760415-762155 bp 6 Locus 6: 1109390-1109615 bp 7 Locus 7: 1450951-1451177 bp 8 Locus 8: 1616934-1624799 bp 9 Locus 9: 1699020-1699576 bp Zoom in on locus 1 x13 x9 Zoom in on locus 2 x12 Zoom in on locus 3 x7 Zoom in on locus 4 x7 Zoom in on locus 5 x27 Zoom in on locus 6 x4 Zoom in on locus 7 x4 Zoom in on locus 8 Zoom in on locus 9 x9 CRISPR array Location: 28728-29545 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 28728-29545 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 30148-30702 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 30148-30702 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 120226-120984 bp Num of repeats: 12 Spacers: s21-s31 CRISPR array Location: 120226-120984 bp Num of repeats: 12 Spacers: s21-s31 CRISPR array Location: 229419-229840 bp Num of repeats: 7 Spacers: s32-s37 CRISPR array Location: 229419-229840 bp Num of repeats: 7 Spacers: s32-s37 CRISPR array Location: 433375-433801 bp Num of repeats: 7 Spacers: s38-s43 CRISPR array Location: 433375-433801 bp Num of repeats: 7 Spacers: s38-s43 CRISPR array Location: 760415-762155 bp Num of repeats: 27 Spacers: s44-s69 CRISPR array Location: 760415-762155 bp Num of repeats: 27 Spacers: s44-s69 CRISPR array Location: 1109390-1109615 bp Num of repeats: 4 Spacers: s70-s72 CRISPR array Location: 1109390-1109615 bp Num of repeats: 4 Spacers: s70-s72 CRISPR array Location: 1450951-1451177 bp Num of repeats: 4 Spacers: s73-s75 CRISPR array Location: 1450951-1451177 bp Num of repeats: 4 Spacers: s73-s75 Gene: cd09641:cas3HD Type: Type-I Location: 1616934-1619342 bp Gene: cd09693:cas5 Type: Type-I Location: 1619369-1620166 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1620182-1621195 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1621215-1622690 bp Gene: pfam01881:cas6 Type: other Location: 1622695-1623432 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1623690-1624799 bp CRISPR array Location: 1699020-1699576 bp Num of repeats: 9 Spacers: s76-s83 CRISPR array Location: 1699020-1699576 bp Num of repeats: 9 Spacers: s76-s83 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 28728-29545 bp]: array | spacers
           [Locus range 30148-30702 bp]: array | spacers
           [Locus range 120226-120984 bp]: array | spacers
           [Locus range 229419-229840 bp]: array | spacers
           [Locus range 433375-433801 bp]: array | spacers
           [Locus range 760415-762155 bp]: array | spacers
           [Locus range 1109390-1109615 bp]: array | spacers
           [Locus range 1450951-1451177 bp]: array | spacers
           [Locus range 1699020-1699576 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURD01000002.1 Clostridioides difficile strain VRECD0025 genome assembly, contig: ERS716922SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 686847 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185865-185959 bp Zoom in on locus 1 x2 CRISPR array Location: 185865-185959 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 185865-185959 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185865-185959 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)