CRISPRone

CRISPRone report for GCA_900165595.1_16852_2_30

♦ Seq 1: FURE01000012.1 Clostridioides difficile strain VRECD0029 genome assembly, contig: ERS716923SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 116468 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18245-20054 bp 2 Locus 2: 100665-100955 bp Zoom in on locus 1 x28 Zoom in on locus 2 x5 CRISPR array Location: 18245-20054 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 18245-20054 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 100665-100955 bp Num of repeats: 5 Spacers: s28-s31 CRISPR array Location: 100665-100955 bp Num of repeats: 5 Spacers: s28-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18245-20054 bp]: array | spacers
           [Locus range 100665-100955 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURE01000001.1 Clostridioides difficile strain VRECD0029 genome assembly, contig: ERS716923SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1152056 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 270781-271277 bp 2 Locus 2: 344559-352905 bp 3 Locus 3: 516325-517073 bp 4 Locus 4: 889997-890288 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x5 CRISPR array Location: 270781-271277 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 270781-271277 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 344559-345668 bp Gene: unk Type: unknown Location: 346127-346303 bp Gene: pfam01881:cas6 Type: other Location: 346404-347141 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 347146-348621 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 348641-349657 bp Gene: cd09693:cas5 Type: Type-I Location: 349673-350470 bp Gene: cd09641:cas3HD Type: Type-I Location: 350497-352905 bp CRISPR array Location: 516325-517073 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 516325-517073 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 889997-890288 bp Num of repeats: 5 Spacers: s19-s22 CRISPR array Location: 889997-890288 bp Num of repeats: 5 Spacers: s19-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 270781-271277 bp]: array | spacers
           [Locus range 516325-517073 bp]: array | spacers
           [Locus range 889997-890288 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURE01000003.1 Clostridioides difficile strain VRECD0029 genome assembly, contig: ERS716923SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 476364 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 191224-201120 bp Zoom in on locus 1 x6 Gene: pfam13280:WYL Type: other Location: 191224-192111 bp Gene: pfam01881:cas6 Type: other Location: 192189-192926 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 192932-194809 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 194811-195725 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 195727-196428 bp Gene: cd09641:cas3HD Type: Type-I Location: 196439-198760 bp Gene: pfam01930:cas4 Type: Type-I Location: 198775-199326 bp Gene: cd09722:cas1 Type: universal Location: 199329-200309 bp Gene: cd09725:cas2 Type: universal Location: 200312-200578 bp CRISPR array Location: 200762-201120 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 200762-201120 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 200762-201120 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FURE01000005.1 Clostridioides difficile strain VRECD0029 genome assembly, contig: ERS716923SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 426030 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 330045-330869 bp 2 Locus 2: 379286-388136 bp Zoom in on locus 1 x13 Zoom in on locus 2 CRISPR array Location: 330045-330869 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 330045-330869 bp Num of repeats: 13 Spacers: s1-s12 Gene: mkCas0115:csx3 Type: other Location: 379286-379963 bp Gene: unk Type: unknown Location: 379964-382525 bp Gene: cls001593:casR Type: Type-I Location: 382746-384020 bp Gene: unk Type: unknown Location: 384181-386199 bp Gene: pfam00078:RT Type: other Location: 386295-388136 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 330045-330869 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FURE01000006.1 Clostridioides difficile strain VRECD0029 genome assembly, contig: ERS716923SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 185145 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120166-121501 bp Zoom in on locus 1 x21 CRISPR array Location: 120166-121501 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 120166-121501 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120166-121501 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FURE01000014.1 Clostridioides difficile strain VRECD0029 genome assembly, contig: ERS716923SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 102583 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16006-18617 bp Zoom in on locus 1 x11 x4 CRISPR array Location: 16006-16691 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 16006-16691 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 18396-18617 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 18396-18617 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16006-16691 bp]: array | spacers
           [Locus range 18396-18617 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)