CRISPRone

CRISPRone report for GCA_900165605.1_16852_2_31

♦ Seq 1: FURF01000006.1 Clostridioides difficile strain VRECD0030 genome assembly, contig: ERS716924SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 163289 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16002-18613 bp Zoom in on locus 1 x11 x4 CRISPR array Location: 16002-16687 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 16002-16687 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 18392-18613 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 18392-18613 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16002-16687 bp]: array | spacers
           [Locus range 18392-18613 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURF01000005.1 Clostridioides difficile strain VRECD0030 genome assembly, contig: ERS716924SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 301083 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63649-64983 bp 2 Locus 2: 200088-200377 bp 3 Locus 3: 280989-282797 bp Zoom in on locus 1 x21 Zoom in on locus 2 x5 Zoom in on locus 3 x28 CRISPR array Location: 63649-64983 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 63649-64983 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 200088-200377 bp Num of repeats: 5 Spacers: s21-s24 CRISPR array Location: 200088-200377 bp Num of repeats: 5 Spacers: s21-s24 CRISPR array Location: 280989-282797 bp Num of repeats: 28 Spacers: s25-s51 CRISPR array Location: 280989-282797 bp Num of repeats: 28 Spacers: s25-s51 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63649-64983 bp]: array | spacers
           [Locus range 200088-200377 bp]: array | spacers
           [Locus range 280989-282797 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURF01000001.1 Clostridioides difficile strain VRECD0030 genome assembly, contig: ERS716924SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1179139 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285761-286051 bp 2 Locus 2: 658853-659600 bp 3 Locus 3: 823020-831366 bp 4 Locus 4: 904649-905144 bp Zoom in on locus 1 x5 Zoom in on locus 2 x12 Zoom in on locus 3 Zoom in on locus 4 x8 CRISPR array Location: 285761-286051 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 285761-286051 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 658853-659600 bp Num of repeats: 12 Spacers: s5-s15 CRISPR array Location: 658853-659600 bp Num of repeats: 12 Spacers: s5-s15 Gene: cd09641:cas3HD Type: Type-I Location: 823020-825428 bp Gene: cd09693:cas5 Type: Type-I Location: 825455-826252 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 826268-827284 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 827304-828779 bp Gene: pfam01881:cas6 Type: other Location: 828784-829521 bp Gene: unk Type: unknown Location: 829622-829798 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 830257-831366 bp CRISPR array Location: 904649-905144 bp Num of repeats: 8 Spacers: s16-s22 CRISPR array Location: 904649-905144 bp Num of repeats: 8 Spacers: s16-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 285761-286051 bp]: array | spacers
           [Locus range 658853-659600 bp]: array | spacers
           [Locus range 904649-905144 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FURF01000002.1 Clostridioides difficile strain VRECD0030 genome assembly, contig: ERS716924SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 902797 bp; # of CRISPR array = 2; # of cas gene = 12  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 275394-285316 bp 2 Locus 2: 514663-523513 bp 3 Locus 3: 571931-572754 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x13 CRISPR array Location: 275394-275751 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 275394-275751 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09725:cas2 Type: universal Location: 275935-276201 bp Gene: cd09722:cas1 Type: universal Location: 276204-277184 bp Gene: pfam01930:cas4 Type: Type-I Location: 277187-277705 bp Gene: cd09641:cas3HD Type: Type-I Location: 277753-280074 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 280085-280786 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 280788-281702 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 281704-283581 bp Gene: pfam01881:cas6 Type: other Location: 283587-284381 bp Gene: pfam13280:WYL Type: other Location: 284402-285316 bp Gene: pfam00078:RT Type: other Location: 514663-516504 bp Gene: unk Type: unknown Location: 516600-518618 bp Gene: cls001593:casR Type: Type-I Location: 518779-520053 bp Gene: unk Type: unknown Location: 520274-522835 bp Gene: mkCas0115:csx3 Type: other Location: 522836-523513 bp CRISPR array Location: 571931-572754 bp Num of repeats: 13 Spacers: s6-s17 CRISPR array Location: 571931-572754 bp Num of repeats: 13 Spacers: s6-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 275394-275751 bp]: array | spacers
           [Locus range 571931-572754 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)