CRISPRone

CRISPRone report for GCA_900165615.1_16852_2_33

♦ Seq 1: FURG01000004.1 Clostridioides difficile strain VRECD0036 genome assembly, contig: ERS716926SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 402072 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 387976-388135 bp Zoom in on locus 1 x3 CRISPR array Location: 387976-388135 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 387976-388135 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 387976-388135 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURG01000001.1 Clostridioides difficile strain VRECD0036 genome assembly, contig: ERS716926SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 773981 bp; # of CRISPR array = 1; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 188200-188689 bp 2 Locus 2: 265985-274322 bp 3 Locus 3: 325525-336521 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 188200-188689 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 188200-188689 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 265985-267094 bp Gene: unk Type: unknown Location: 267548-267724 bp Gene: pfam01881:cas6 Type: other Location: 267825-268562 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 268567-270033 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270052-271065 bp Gene: cd09693:cas5 Type: Type-I Location: 271081-271887 bp Gene: cd09641:cas3HD Type: Type-I Location: 271914-274322 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 325525-326010 bp Gene: cd06127:DEDDh Type: Type-I Location: 332852-333898 bp Gene: unk Type: unknown Location: 334269-334775 bp Gene: unk Type: unknown Location: 335188-335856 bp Gene: cd06127:DEDDh Type: Type-I Location: 336015-336521 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 188200-188689 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURG01000002.1 Clostridioides difficile strain VRECD0036 genome assembly, contig: ERS716926SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 697764 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 365768-367311 bp 2 Locus 2: 501006-504486 bp 3 Locus 3: 603171-603463 bp Zoom in on locus 1 x24 Zoom in on locus 2 x11 x8 Zoom in on locus 3 x5 CRISPR array Location: 365768-367311 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 365768-367311 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 501006-501695 bp Num of repeats: 11 Spacers: s24-s33 CRISPR array Location: 501006-501695 bp Num of repeats: 11 Spacers: s24-s33 CRISPR array Location: 503999-504486 bp Num of repeats: 8 Spacers: s34-s40 CRISPR array Location: 503999-504486 bp Num of repeats: 8 Spacers: s34-s40 CRISPR array Location: 603171-603463 bp Num of repeats: 5 Spacers: s41-s44 CRISPR array Location: 603171-603463 bp Num of repeats: 5 Spacers: s41-s44 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 365768-367311 bp]: array | spacers
           [Locus range 501006-501695 bp]: array | spacers
           [Locus range 503999-504486 bp]: array | spacers
           [Locus range 603171-603463 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)