CRISPRone

CRISPRone report for GCA_900165625.1_16852_2_32

♦ Seq 1: FURH01000005.1 Clostridioides difficile strain VRECD0033 genome assembly, contig: ERS716925SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 181366 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16009-18620 bp Zoom in on locus 1 x11 x4 CRISPR array Location: 16009-16694 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 16009-16694 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 18399-18620 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 18399-18620 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16009-16694 bp]: array | spacers
           [Locus range 18399-18620 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURH01000001.1 Clostridioides difficile strain VRECD0033 genome assembly, contig: ERS716925SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 2137866 bp; # of CRISPR array = 7; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 330046-330870 bp 2 Locus 2: 379287-388137 bp 3 Locus 3: 444532-446341 bp 4 Locus 4: 526952-527242 bp 5 Locus 5: 663133-664468 bp 6 Locus 6: 983575-983865 bp 7 Locus 7: 1356667-1357414 bp 8 Locus 8: 1520834-1529180 bp 9 Locus 9: 1602463-1602958 bp Zoom in on locus 1 x13 Zoom in on locus 2 Zoom in on locus 3 x28 Zoom in on locus 4 x5 Zoom in on locus 5 x21 Zoom in on locus 6 x5 Zoom in on locus 7 x12 Zoom in on locus 8 Zoom in on locus 9 x8 CRISPR array Location: 330046-330870 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 330046-330870 bp Num of repeats: 13 Spacers: s1-s12 Gene: mkCas0115:csx3 Type: other Location: 379287-379964 bp Gene: unk Type: unknown Location: 379965-382526 bp Gene: cls001593:casR Type: Type-I Location: 382747-384021 bp Gene: unk Type: unknown Location: 384182-386200 bp Gene: pfam00078:RT Type: other Location: 386296-388137 bp CRISPR array Location: 444532-446341 bp Num of repeats: 28 Spacers: s13-s39 CRISPR array Location: 444532-446341 bp Num of repeats: 28 Spacers: s13-s39 CRISPR array Location: 526952-527242 bp Num of repeats: 5 Spacers: s40-s43 CRISPR array Location: 526952-527242 bp Num of repeats: 5 Spacers: s40-s43 CRISPR array Location: 663133-664468 bp Num of repeats: 21 Spacers: s44-s63 CRISPR array Location: 663133-664468 bp Num of repeats: 21 Spacers: s44-s63 CRISPR array Location: 983575-983865 bp Num of repeats: 5 Spacers: s64-s67 CRISPR array Location: 983575-983865 bp Num of repeats: 5 Spacers: s64-s67 CRISPR array Location: 1356667-1357414 bp Num of repeats: 12 Spacers: s68-s78 CRISPR array Location: 1356667-1357414 bp Num of repeats: 12 Spacers: s68-s78 Gene: cd09641:cas3HD Type: Type-I Location: 1520834-1523242 bp Gene: cd09693:cas5 Type: Type-I Location: 1523269-1524066 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1524082-1525098 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1525118-1526593 bp Gene: pfam01881:cas6 Type: other Location: 1526598-1527335 bp Gene: unk Type: unknown Location: 1527436-1527612 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1528071-1529180 bp CRISPR array Location: 1602463-1602958 bp Num of repeats: 8 Spacers: s79-s85 CRISPR array Location: 1602463-1602958 bp Num of repeats: 8 Spacers: s79-s85 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 330046-330870 bp]: array | spacers
           [Locus range 444532-446341 bp]: array | spacers
           [Locus range 526952-527242 bp]: array | spacers
           [Locus range 663133-664468 bp]: array | spacers
           [Locus range 983575-983865 bp]: array | spacers
           [Locus range 1356667-1357414 bp]: array | spacers
           [Locus range 1602463-1602958 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURH01000002.1 Clostridioides difficile strain VRECD0033 genome assembly, contig: ERS716925SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 593675 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 152059-161955 bp Zoom in on locus 1 x6 Gene: pfam13280:WYL Type: other Location: 152059-152946 bp Gene: pfam01881:cas6 Type: other Location: 153024-153761 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 153767-155644 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 155646-156560 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 156562-157263 bp Gene: cd09641:cas3HD Type: Type-I Location: 157274-159595 bp Gene: pfam01930:cas4 Type: Type-I Location: 159610-160161 bp Gene: cd09722:cas1 Type: universal Location: 160164-161144 bp Gene: cd09725:cas2 Type: universal Location: 161147-161413 bp CRISPR array Location: 161597-161955 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 161597-161955 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 161597-161955 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)