CRISPRone

CRISPRone report for GCA_900165635.1_16852_2_34

♦ Seq 1: FURI01000001.1 Clostridioides difficile strain VRECD0037 genome assembly, contig: ERS716927SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1152243 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 270781-271277 bp 2 Locus 2: 344559-352905 bp 3 Locus 3: 516325-517073 bp 4 Locus 4: 890187-890478 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x5 CRISPR array Location: 270781-271277 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 270781-271277 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 344559-345668 bp Gene: unk Type: unknown Location: 346127-346303 bp Gene: pfam01881:cas6 Type: other Location: 346404-347141 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 347146-348621 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 348641-349657 bp Gene: cd09693:cas5 Type: Type-I Location: 349673-350470 bp Gene: cd09641:cas3HD Type: Type-I Location: 350497-352905 bp CRISPR array Location: 516325-517073 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 516325-517073 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 890187-890478 bp Num of repeats: 5 Spacers: s19-s22 CRISPR array Location: 890187-890478 bp Num of repeats: 5 Spacers: s19-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 270781-271277 bp]: array | spacers
           [Locus range 516325-517073 bp]: array | spacers
           [Locus range 890187-890478 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURI01000002.1 Clostridioides difficile strain VRECD0037 genome assembly, contig: ERS716927SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 648554 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 191179-201102 bp Zoom in on locus 1 x6 Gene: pfam13280:WYL Type: other Location: 191179-192093 bp Gene: pfam01881:cas6 Type: other Location: 192114-192908 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 192914-194791 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 194793-195707 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 195709-196410 bp Gene: cd09641:cas3HD Type: Type-I Location: 196421-198742 bp Gene: pfam01930:cas4 Type: Type-I Location: 198757-199308 bp Gene: cd09722:cas1 Type: universal Location: 199311-200291 bp Gene: cd09725:cas2 Type: universal Location: 200294-200560 bp CRISPR array Location: 200744-201102 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 200744-201102 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 200744-201102 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURI01000012.1 Clostridioides difficile strain VRECD0037 genome assembly, contig: ERS716927SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 96543 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9931-12542 bp Zoom in on locus 1 x11 x4 CRISPR array Location: 9931-10616 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 9931-10616 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 12321-12542 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 12321-12542 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9931-10616 bp]: array | spacers
           [Locus range 12321-12542 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FURI01000006.1 Clostridioides difficile strain VRECD0037 genome assembly, contig: ERS716927SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 186069 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63612-64946 bp Zoom in on locus 1 x21 CRISPR array Location: 63612-64946 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 63612-64946 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63612-64946 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FURI01000004.1 Clostridioides difficile strain VRECD0037 genome assembly, contig: ERS716927SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 542861 bp; # of CRISPR array = 3; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15613-15902 bp 2 Locus 2: 96514-98322 bp 3 Locus 3: 154717-163567 bp 4 Locus 4: 211985-212808 bp Zoom in on locus 1 x5 Zoom in on locus 2 x28 Zoom in on locus 3 Zoom in on locus 4 x13 CRISPR array Location: 15613-15902 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 15613-15902 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 96514-98322 bp Num of repeats: 28 Spacers: s5-s31 CRISPR array Location: 96514-98322 bp Num of repeats: 28 Spacers: s5-s31 Gene: pfam00078:RT Type: other Location: 154717-156558 bp Gene: unk Type: unknown Location: 156654-158672 bp Gene: cls001593:casR Type: Type-I Location: 158833-160107 bp Gene: unk Type: unknown Location: 160328-162889 bp Gene: mkCas0115:csx3 Type: other Location: 162890-163567 bp CRISPR array Location: 211985-212808 bp Num of repeats: 13 Spacers: s32-s43 CRISPR array Location: 211985-212808 bp Num of repeats: 13 Spacers: s32-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 15613-15902 bp]: array | spacers
           [Locus range 96514-98322 bp]: array | spacers
           [Locus range 211985-212808 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)